Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0018636

Physical Location & Seq

Genomic Coordinates Reverse (-)

61637253 .. 61637849

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0501500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTGTCGACACCAACCTCCTGGACGCCCTCCACGACCTTTTGGACTTCTCTGACGAGCAAAATCAGGCGAGCCACCATGCGCCTTCGCGCCAATACGTCCGGGAAGCCAAGGCCATGTCGGCTACTCCAGCTGACGTGAAGGAGACTCAGAATGACTACATCTTTGTGATAGATGTGCCCGGGCTGAAGTCGGACCAGATCAAAGTCCATCTGGAAGACGACAACGTTTTGGTGGTGTGCGGCGAGAGAAAGAGGGAGAAGGAGAGAGACCAGGGAGTGAGGTACCTGAGGATGGAGAGGAGGCTCGGCAAGTATCTCAAGAAGTTTGTGCTGCCGGAGAATGCTGATGTAGAGAAGATCAGTGCCGAGTGTCAGGATGGGGTGTTGACTATTGTGGTGGAGAAGAAGCCGCCGCCGGAGCTGAAGAAGCCCAAGATTGTTCAGGTGAGGATTGGCGACAGCCAAGAAGGCCAACAGGGTCAAGGTGGCCAGTGGGGCCAAGAGGGTCAAGGTGGAGGTCAAGGAGACCAGTGGGGTCAAAAGGGCCAAGGAGGTCAAGAGGGTCAGGGTGGCCAAGATGGCAACAGCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

198

Amino Acids

21.93

Weight (kDa)

5.33

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	46 - 150	1.6e-26	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018636)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0189961
rosa_laevigata	RLG00000004573 RLG00000024741
rosa_multiflora	Rmu_co8447775.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265010
rosa_rugosa	Rorug06G0501500
rosa_samantha	Rh7AG106600 Rh7BG109300 Rh7CG111400 Rh7DG109800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	91
AciI	CCGC	4 cut(s)	243, 413, 416, 592
AclI	AACGTT	1 cut(s)	228
AcoI	YGGCCR	2 cut(s)	490, 574
AcuI	CTGAAG	2 cut(s)	209, 446
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	21, 273
AluBI	AGCT	2 cut(s)	134, 424
AluI	AGCT	2 cut(s)	134, 424
Alw26I	GTCTC	3 cut(s)	140, 264, 522
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	6 cut(s)	114, 472, 490, 499, 547, 574
ApeKI	GCWGC	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp718I	GGTACC	1 cut(s)	285
AspLEI	GCGC	2 cut(s)	85, 93
AspS9I	GGNCC	3 cut(s)	196, 499, 547
AsuC2I	CCSGG	3 cut(s)	104, 183, 184
AsuHPI	GGTGA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	183
BalI	TGGCCA	2 cut(s)	492, 576
BanI	GGYRCC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	4 cut(s)	219, 289, 374, 575
BciT130I	CCWGG	2 cut(s)	23, 275
BcnI	CCSGG	3 cut(s)	104, 183, 184
BcoDI	GTCTC	3 cut(s)	140, 264, 522
BfaI	CTAG	1 cut(s)	595
BglI	GCCNNNNNGGC	4 cut(s)	122, 471, 498, 582
BisI	GCNGC	5 cut(s)	244, 335, 413, 416, 592
BlsI	GCNGC	5 cut(s)	245, 336, 414, 417, 593
Bme1390I	CCNGG	5 cut(s)	23, 104, 183, 184, 275
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	196, 499, 547
BmiI	GGNNCC	2 cut(s)	287, 500
BmrFI	CCNGG	5 cut(s)	23, 104, 183, 184, 275
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	3 cut(s)	104, 183, 184
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	2 cut(s)	264, 522
BsaJI	CCNNGG	4 cut(s)	111, 182, 274, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	493, 532
Bse21I	CCTNAGG	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	23, 275
BseDI	CCNNGG	4 cut(s)	111, 182, 274, 550
BseGI	GGATG	2 cut(s)	300, 385
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	164, 281
BseNI	ACTGG	2 cut(s)	493, 532
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	6 cut(s)	116, 474, 492, 501, 549, 576
BshNI	GGYRCC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	4 cut(s)	103, 183, 338, 419
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	3 cut(s)	140, 264, 522
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	6 cut(s)	116, 474, 492, 501, 549, 576
Bso31I	GGTCTC	2 cut(s)	264, 522
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	201, 360
BspACI	CCGC	4 cut(s)	243, 413, 416, 592
BspANI	GGCC	6 cut(s)	116, 474, 492, 501, 549, 576
BspCNI	CTCAG	2 cut(s)	163, 282
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	287, 500
BspT107I	GGYRCC	1 cut(s)	285
BspTNI	GGTCTC	2 cut(s)	264, 522
BsrI	ACTGG	2 cut(s)	493, 532
BssECI	CCNNGG	4 cut(s)	111, 182, 274, 550
BssMI	GATC	2 cut(s)	201, 360
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	111, 550
Bst2UI	CCWGG	2 cut(s)	23, 275
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	150, 290
BstF5I	GGATG	2 cut(s)	300, 385
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	85, 93
BstKTI	GATC	2 cut(s)	204, 363
BstMAI	GTCTC	3 cut(s)	140, 264, 522
BstMBI	GATC	2 cut(s)	201, 360
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 131, 421, 430, 471, 498, 582, 591
BstNI	CCWGG	2 cut(s)	23, 275
BstSCI	CCNGG	5 cut(s)	21, 102, 181, 182, 273
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	290
BsuRI	GGCC	6 cut(s)	116, 474, 492, 501, 549, 576
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	300, 385
BtsIMutI	CAGTG	3 cut(s)	370, 500, 539
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	2 cut(s)	85, 93
Cfr13I	GGNCC	3 cut(s)	196, 499, 547
Cfr9I	CCCGGG	1 cut(s)	182
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	2 cut(s)	80, 118
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	150, 290
DpnI	GATC	2 cut(s)	203, 362
DpnII	GATC	2 cut(s)	201, 360
EaeI	YGGCCR	2 cut(s)	490, 574
Eco130I	CCWWGG	2 cut(s)	111, 550
Eco31I	GGTCTC	2 cut(s)	264, 522
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	209, 446
Eco81I	CCTNAGG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	21, 273
EcoT14I	CCWWGG	2 cut(s)	111, 550
ErhI	CCWWGG	2 cut(s)	111, 550
FaeI	CATG	2 cut(s)	83, 121
FaiI	YATR	2 cut(s)	81, 119
FatI	CATG	2 cut(s)	79, 117
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	5 cut(s)	244, 335, 413, 416, 592
FokI	GGATG	2 cut(s)	307, 392
Fsp4HI	GCNGC	5 cut(s)	244, 335, 413, 416, 592
FspBI	CTAG	1 cut(s)	595
GlaI	GCGC	2 cut(s)	84, 92
GluI	GCNGC	5 cut(s)	244, 335, 413, 416, 592
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	6 cut(s)	116, 474, 492, 501, 549, 576
HapII	CCGG	4 cut(s)	103, 183, 338, 419
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	2 cut(s)	85, 93
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	83, 121
Hin6I	GCGC	2 cut(s)	83, 91
HinP1I	GCGC	2 cut(s)	83, 91
HincII	GTYRAC	2 cut(s)	10, 390
HindII	GTYRAC	2 cut(s)	10, 390
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	4 cut(s)	103, 183, 338, 419
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	2 cut(s)	10, 390
Hpy188I	TCNGA	3 cut(s)	55, 153, 196
Hpy188III	TCNNGA	4 cut(s)	215, 322, 377, 560
Hpy8I	GTNNAC	2 cut(s)	10, 390
HpyAV	CCTTC	4 cut(s)	96, 136, 256, 464
HpyCH4IV	ACGT	3 cut(s)	99, 138, 228
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 131, 421, 430, 471, 498, 582, 591
HpyF3I	CTNAG	2 cut(s)	150, 290
HpySE526I	ACGT	3 cut(s)	99, 138, 228
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	83, 121
HspAI	GCGC	2 cut(s)	83, 91
KpnI	GGTACC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	201, 360
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	595
MaeII	ACGT	3 cut(s)	99, 138, 228
MalI	GATC	2 cut(s)	203, 362
MboI	GATC	2 cut(s)	201, 360
MboII	GAAGA	4 cut(s)	230, 370, 418, 439
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	2 cut(s)	492, 576
MluNI	TGGCCA	2 cut(s)	492, 576
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	2 cut(s)	492, 576
MscI	TGGCCA	2 cut(s)	492, 576
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	2 cut(s)	492, 576
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	4 cut(s)	103, 183, 338, 419
MspR9I	CCNGG	5 cut(s)	23, 104, 183, 184, 275
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	2 cut(s)	23, 275
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	8 cut(s)	122, 131, 421, 430, 471, 498, 582, 591
NciI	CCSGG	3 cut(s)	104, 183, 184
NdeII	GATC	2 cut(s)	201, 360
NlaIII	CATG	2 cut(s)	83, 121
NlaIV	GGNNCC	2 cut(s)	287, 500
NmeAIII	GCCGAG	2 cut(s)	288, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	349
PfoI	TCCNGGA	2 cut(s)	21, 102
PkrI	GCNGC	5 cut(s)	245, 336, 414, 417, 593
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	21, 273
PspGI	CCWGG	2 cut(s)	21, 273
PspN4I	GGNNCC	2 cut(s)	287, 500
PspPI	GGNCC	3 cut(s)	196, 499, 547
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	167
SalI	GTCGAC	1 cut(s)	8
SatI	GCNGC	5 cut(s)	244, 335, 413, 416, 592
Sau3AI	GATC	2 cut(s)	201, 360
Sau96I	GGNCC	3 cut(s)	196, 499, 547
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	5 cut(s)	23, 104, 183, 184, 275
SduI	GDGCHC	1 cut(s)	183
SfiI	GGCCNNNNNGGCC	1 cut(s)	498
SinI	GGWCC	1 cut(s)	196
SmaI	CCCGGG	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SrfI	GCCCGGGC	1 cut(s)	184
SsiI	CCGC	4 cut(s)	243, 413, 416, 592
SspMI	CTAG	1 cut(s)	595
StyD4I	CCNGG	5 cut(s)	21, 102, 181, 182, 273
StyI	CCWWGG	2 cut(s)	111, 550
TaiI	ACGT	3 cut(s)	102, 141, 231
TaqI	TCGA	1 cut(s)	9
TauI	GCSGC	4 cut(s)	246, 415, 418, 594
TscAI	CASTG	3 cut(s)	370, 500, 539
TseI	GCWGC	1 cut(s)	334
TspMI	CCCGGG	1 cut(s)	182
TspRI	CASTG	3 cut(s)	370, 500, 539
VpaK11BI	GGWCC	1 cut(s)	196
XmaI	CCCGGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.