Rh7AG106600

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
8445731 .. 8447073
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG106600.1

Sequence Viewer

Length: 1269 bp
ATGAGTCTGGGGACCGATTGTCCTCCAATCCATAATAACTCTGGTGATGAATTCTCCATCTGTGAGGAGAGGACCACAAAAAGGCCTAAGGTAGAAGAAGAGATTAATGATCATCATCTGGGAACAACAAGCATACATCAGATAGAGATCAAAGATACTTGTGCTTCTTGTTTGTGTGATGATTGTGCCAACTTTGCTGTGACATTCAGTTTCAAATATAACGATGGTGAAATTGAACTTTTACGCAAGGTCGCCACTCACGAAATACTCCACCGCAGAAAACTCCAGTTGGTACTCAATCTCAATCACACCTTGTTGAGAGTCGCCGGTATCGATGATCTGACCCTGGAAGAAGAAGCATATTTAGATACCCAATTCACCGATGATTCTCTGCGGCAAGATATTCTCATTGTGACAGTTCCTCCCAAGATGAAATCTATGTTTCTCAAGTTTAGGCCCTTTGTTCAAACCTTTCTCAAGGAAGCCAGTGATATGTTTGAGATGAATGTGTACTCAAATTCCCCTCTATCTCTTGTGAGGGAAATTATTCGGCTACTGGATCCAAGAAATGAGTACTTCGGTTCTAGGGTGTTTTCGCGAGACGATTTTTGCAGCACCCACCCGAAAAACAAGTGCCTCGATGTTTTGCTTGCTCAAGAGTCTGCTGTTTTGATCCTTGATCATAAACTAGAGGCATGGAGGGAGCAAAATCAAAATAATGTAATGCCTATGCAAGAGTATTTTTTCTGTGAAGAAGAGGAGAGCGAGCTCAGATCTTGTTGCGAGATGGAAACTAATGAAGGGTATTATCTTGCACTTATTCTTCAACGTCTTAAGCAGATACACAATAGGTTCTTTGATGACGAAGTAATATGTGACAAACTTATCGATAGAGATGTGAGGAAGGTGTTAGAAACTCTTCGGGGTTCCGTCTTGGGAGGGTGTAAAATTGCTTTCGACCCTCTTCAGGCCGATAAGCTACAGTTGTGGAAGATGGCAGAGCAGTTGGGAGCTACTTGTGTTGAACAAATGGACGCATCGGTCACACATGTGGTTGCAGCTCATGCTGGAACACCGGAATCTCGTTGGGCACTGGAAGAGAGAAAGTTCTTGGTCTATCCGAGTTGGATTGAAGCATCACATTGTATGTGGCAAAAGTGTCATGAAGACAGGTTTCCTGTTTTTGAGGATGACCAAATTGGGCAAGACCGCAAGAGAGACAAGAAAAAGAAGAGTAAAAAGGAAGAGATTTTAGCAACATTGTCTTAG

Protein Analysis

422

Amino Acids

49.0

Weight (kDa)

5.22

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 97 - 262 5.3e-21 NLI interacting factor-like phosphatase
BRCT PF00533 311 - 380 4.3e-06 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018636)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1040
AccII CGCG 1 cut(s) 598
AciI CCGC 3 cut(s) 274, 394, 1210
AclWI GGATC 3 cut(s) 554, 567, 667
AcsI RAATTY 2 cut(s) 50, 517
AcuI CTGAAG 1 cut(s) 950
AfaI GTAC 3 cut(s) 294, 512, 575
AfiI CCNNNNNNNGG 2 cut(s) 81, 967
AflII CTTAAG 1 cut(s) 833
AflIII ACRYGT 1 cut(s) 1048
AgsI TTSAA 6 cut(s) 214, 236, 467, 827, 1025, 1133
AhdI GACNNNNNGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 345
AleI CACNNNNGTG 1 cut(s) 1049
AluBI AGCT 4 cut(s) 769, 979, 1013, 1061
AluI AGCT 4 cut(s) 769, 979, 1013, 1061
Alw21I GWGCWC 1 cut(s) 771
Alw26I GTCTC 2 cut(s) 594, 1212
AlwI GGATC 3 cut(s) 554, 567, 667
AoxI GGCC 3 cut(s) 83, 455, 969
ApeKI GCWGC 2 cut(s) 612, 1058
ApoI RAATTY 2 cut(s) 50, 517
AseI ATTAAT 1 cut(s) 105
Asp700I GAANNNNTTC 2 cut(s) 546, 918
AspS9I GGNCC 3 cut(s) 12, 72, 456
AsuHPI GGTGA 3 cut(s) 56, 239, 370
AvaII GGWCC 2 cut(s) 12, 72
AxyI CCTNAGG 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 1093
BamHI GGATCC 1 cut(s) 559
BanII GRGCYC 1 cut(s) 771
BbsI GAAGAC 1 cut(s) 1173
Bbv12I GWGCWC 1 cut(s) 771
BbvI GCAGC 2 cut(s) 624, 1070
BccI CCATC 4 cut(s) 65, 218, 781, 988
BciT130I CCWGG 1 cut(s) 347
BclI TGATCA 2 cut(s) 109, 679
BcoDI GTCTC 2 cut(s) 594, 1212
BfaI CTAG 2 cut(s) 585, 689
BfmI CTRYAG 1 cut(s) 980
BfrI CTTAAG 1 cut(s) 833
BglII AGATCT 1 cut(s) 773
BisI GCNGC 3 cut(s) 395, 613, 1059
BlsI GCNGC 3 cut(s) 396, 614, 1060
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 2 cut(s) 12, 72
BmeRI GACNNNNNGTC 1 cut(s) 18
BmgT120I GGNCC 3 cut(s) 12, 72, 456
BmiI GGNNCC 3 cut(s) 13, 561, 928
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 1046, 1145
BpiI GAAGAC 1 cut(s) 1173
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 3 cut(s) 431, 461, 639
Bsa29I ATCGAT 2 cut(s) 333, 888
BsaBI GATNNNNATC 2 cut(s) 114, 146
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 1075
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 967
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 4 cut(s) 286, 486, 561, 1098
Bse21I CCTNAGG 1 cut(s) 87
Bse8I GATNNNNATC 2 cut(s) 114, 146
BseBI CCWGG 1 cut(s) 347
BseCI ATCGAT 2 cut(s) 333, 888
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 1195
BseJI GATNNNNATC 2 cut(s) 114, 146
BseLI CCNNNNNNNGG 2 cut(s) 81, 967
BseMII CTCAG 1 cut(s) 784
BseNI ACTGG 4 cut(s) 286, 486, 561, 1098
BseRI GAGGAG 2 cut(s) 80, 773
BseSI GKGCMC 1 cut(s) 1093
BseXI GCAGC 2 cut(s) 624, 1070
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 3 cut(s) 85, 457, 971
BshVI ATCGAT 2 cut(s) 333, 888
BsiHKAI GWGCWC 1 cut(s) 771
BsiSI CCGG 2 cut(s) 327, 1076
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 81, 967
BsmAI GTCTC 2 cut(s) 594, 1212
BsmBI CGTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 3 cut(s) 85, 457, 971
Bsp1286I GDGCHC 2 cut(s) 771, 1093
Bsp143I GATC 7 cut(s) 109, 147, 337, 559, 672, 679, 773
Bsp68I TCGCGA 1 cut(s) 598
BspACI CCGC 3 cut(s) 274, 394, 1210
BspANI GGCC 3 cut(s) 85, 457, 971
BspCNI CTCAG 1 cut(s) 783
BspDI ATCGAT 2 cut(s) 333, 888
BspFNI CGCG 1 cut(s) 598
BspHI TCATGA 1 cut(s) 1162
BspLI GGNNCC 3 cut(s) 13, 561, 928
BspPI GGATC 3 cut(s) 554, 567, 667
BspTI CTTAAG 1 cut(s) 833
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 4 cut(s) 286, 486, 561, 1098
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 7 cut(s) 109, 147, 337, 559, 672, 679, 773
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 418, 984
Bst6I CTCTTC 7 cut(s) 93, 750, 924, 969, 1092, 1226, 1239
BstAFI CTTAAG 1 cut(s) 833
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstC8I GCNNGC 2 cut(s) 651, 767
BstDEI CTNAG 3 cut(s) 87, 770, 1266
BstF5I GGATG 1 cut(s) 1195
BstFNI CGCG 1 cut(s) 598
BstKTI GATC 7 cut(s) 112, 150, 340, 562, 675, 682, 776
BstMAI GTCTC 2 cut(s) 594, 1212
BstMBI GATC 7 cut(s) 109, 147, 337, 559, 672, 679, 773
BstMWI GCNNNNNNNGC 2 cut(s) 194, 1064
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 1052
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 980
BstSLI GKGCMC 1 cut(s) 1093
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 624, 1070
BstV2I GAAGAC 1 cut(s) 1173
BstX2I RGATCY 2 cut(s) 559, 773
BstYI RGATCY 2 cut(s) 559, 773
Bsu15I ATCGAT 2 cut(s) 333, 888
Bsu36I CCTNAGG 1 cut(s) 87
BsuRI GGCC 3 cut(s) 85, 457, 971
BsuTUI ATCGAT 2 cut(s) 333, 888
BtsCI GGATG 1 cut(s) 1195
BtsIMutI CAGTG 2 cut(s) 493, 1091
BtuMI TCGCGA 1 cut(s) 598
Cac8I GCNNGC 2 cut(s) 651, 767
CciI TCATGA 1 cut(s) 1162
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 3 cut(s) 12, 72, 456
ClaI ATCGAT 2 cut(s) 333, 888
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 3 cut(s) 293, 511, 574
CviAII CATG 4 cut(s) 696, 1049, 1064, 1163
CviJI RGCY 9 cut(s) 85, 457, 485, 553, 769, 971, 979, 1013, 1061
CviKI_1 RGCY 9 cut(s) 85, 457, 485, 553, 769, 971, 979, 1013, 1061
CviQI GTAC 3 cut(s) 293, 511, 574
DdeI CTNAG 3 cut(s) 87, 770, 1266
DpnI GATC 7 cut(s) 111, 149, 339, 561, 674, 681, 775
DpnII GATC 7 cut(s) 109, 147, 337, 559, 672, 679, 773
DrdI GACNNNNNNGTC 1 cut(s) 1040
DriI GACNNNNNGTC 1 cut(s) 18
DseDI GACNNNNNNGTC 1 cut(s) 1040
Eam1104I CTCTTC 7 cut(s) 93, 750, 924, 969, 1092, 1226, 1239
Eam1105I GACNNNNNGTC 1 cut(s) 18
EarI CTCTTC 7 cut(s) 93, 750, 924, 969, 1092, 1226, 1239
Ecl136II GAGCTC 1 cut(s) 769
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 771
Eco47I GGWCC 2 cut(s) 12, 72
Eco53kI GAGCTC 1 cut(s) 769
Eco57I CTGAAG 1 cut(s) 950
Eco81I CCTNAGG 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 769
EcoO109I RGGNCCY 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 771
Esp3I CGTCTC 1 cut(s) 594
FaeI CATG 4 cut(s) 699, 1052, 1067, 1166
FaqI GGGAC 1 cut(s) 25
FatI CATG 4 cut(s) 695, 1048, 1063, 1162
FbaI TGATCA 2 cut(s) 109, 679
Fnu4HI GCNGC 3 cut(s) 395, 613, 1059
FokI GGATG 1 cut(s) 1202
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 3 cut(s) 395, 613, 1059
FspBI CTAG 2 cut(s) 585, 689
GluI GCNGC 3 cut(s) 395, 613, 1059
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 85, 457, 971
HapII CCGG 2 cut(s) 327, 1076
HgaI GACGC 1 cut(s) 1043
Hin1II CATG 4 cut(s) 699, 1052, 1067, 1166
HinfI GANTC 5 cut(s) 4, 321, 386, 659, 1079
HpaII CCGG 2 cut(s) 327, 1076
HphI GGTGA 3 cut(s) 56, 239, 370
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 4 cut(s) 141, 342, 773, 1122
Hpy188III TCNNGA 4 cut(s) 260, 597, 656, 1163
Hpy8I GTNNAC 1 cut(s) 511
HpyAV CCTTC 2 cut(s) 794, 898
HpyCH4III ACNGT 2 cut(s) 418, 984
HpyCH4IV ACGT 1 cut(s) 829
HpyCH4V TGCA 4 cut(s) 612, 733, 815, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 1064
HpyF3I CTNAG 3 cut(s) 87, 770, 1266
HpySE526I ACGT 1 cut(s) 829
Hsp92II CATG 4 cut(s) 699, 1052, 1067, 1166
Ksp22I TGATCA 2 cut(s) 109, 679
Kzo9I GATC 7 cut(s) 109, 147, 337, 559, 672, 679, 773
LmnI GCTCC 2 cut(s) 703, 1010
Lsp1109I GCAGC 2 cut(s) 624, 1070
LweI GCATC 2 cut(s) 1046, 1145
MaeI CTAG 2 cut(s) 585, 689
MaeII ACGT 1 cut(s) 829
MaeIII GTNAC 4 cut(s) 199, 412, 875, 1042
MalI GATC 7 cut(s) 111, 149, 339, 561, 674, 681, 775
MboI GATC 7 cut(s) 109, 147, 337, 559, 672, 679, 773
MflI RGATCY 2 cut(s) 559, 773
MhlI GDGCHC 2 cut(s) 771, 1093
MluCI AATT 7 cut(s) 50, 231, 374, 517, 543, 948, 1197
MlyI GAGTC 3 cut(s) 13, 330, 668
MmeI TCCRAC 1 cut(s) 1106
MroXI GAANNNNTTC 2 cut(s) 546, 918
MseI TTAA 2 cut(s) 105, 834
MslI CAYNNNNRTG 1 cut(s) 1049
MspCI CTTAAG 1 cut(s) 833
MspI CCGG 2 cut(s) 327, 1076
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 2 cut(s) 194, 1064
NdeII GATC 7 cut(s) 109, 147, 337, 559, 672, 679, 773
NlaIII CATG 4 cut(s) 699, 1052, 1067, 1166
NlaIV GGNNCC 3 cut(s) 13, 561, 928
NmuCI GTSAC 4 cut(s) 199, 412, 875, 1042
NruI TCGCGA 1 cut(s) 598
NspI RCATGY 1 cut(s) 1052
OliI CACNNNNGTG 1 cut(s) 1049
PagI TCATGA 1 cut(s) 1162
PceI AGGCCT 1 cut(s) 85
PciI ACATGT 1 cut(s) 1048
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 330
PdmI GAANNNNTTC 2 cut(s) 546, 918
PfeI GAWTC 2 cut(s) 386, 1079
PkrI GCNGC 3 cut(s) 396, 614, 1060
PleI GAGTC 3 cut(s) 12, 329, 667
PpsI GAGTC 3 cut(s) 12, 329, 667
PscI ACATGT 1 cut(s) 1048
PshBI ATTAAT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 3 cut(s) 13, 561, 928
PspPI GGNCC 3 cut(s) 12, 72, 456
PsuI RGATCY 2 cut(s) 559, 773
RruI TCGCGA 1 cut(s) 598
RsaI GTAC 3 cut(s) 294, 512, 575
RsaNI GTAC 3 cut(s) 293, 511, 574
RseI CAYNNNNRTG 1 cut(s) 1049
SacI GAGCTC 1 cut(s) 771
SaqAI TTAA 2 cut(s) 105, 834
SatI GCNGC 3 cut(s) 395, 613, 1059
Sau3AI GATC 7 cut(s) 109, 147, 337, 559, 672, 679, 773
Sau96I GGNCC 3 cut(s) 12, 72, 456
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 3 cut(s) 13, 330, 668
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 771, 1093
SfaNI GCATC 2 cut(s) 1046, 1145
SfcI CTRYAG 1 cut(s) 980
SinI GGWCC 2 cut(s) 12, 72
SmiMI CAYNNNNRTG 1 cut(s) 1049
SmlI CTYRAG 4 cut(s) 446, 476, 654, 833
SmoI CTYRAG 4 cut(s) 446, 476, 654, 833
Sse9I AATT 7 cut(s) 50, 231, 374, 517, 543, 948, 1197
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 3 cut(s) 274, 394, 1210
SspMI CTAG 2 cut(s) 585, 689
SstI GAGCTC 1 cut(s) 771
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 418, 984
TaiI ACGT 1 cut(s) 832
TaqI TCGA 4 cut(s) 333, 639, 888, 957
TaqII GACCGA 2 cut(s) 29, 1030
TasI AATT 7 cut(s) 50, 231, 374, 517, 543, 948, 1197
TatI WGTACW 2 cut(s) 510, 573
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 2 cut(s) 386, 1079
Tru1I TTAA 2 cut(s) 105, 834
Tru9I TTAA 2 cut(s) 105, 834
TscAI CASTG 2 cut(s) 493, 1098
TseFI GTSAC 4 cut(s) 199, 412, 875, 1042
TseI GCWGC 2 cut(s) 612, 1058
Tsp45I GTSAC 4 cut(s) 199, 412, 875, 1042
TspDTI ATGAA 5 cut(s) 63, 446, 518, 813, 1179
TspGWI ACGGA 1 cut(s) 919
TspRI CASTG 2 cut(s) 493, 1098
Vha464I CTTAAG 1 cut(s) 833
VpaK11BI GGWCC 2 cut(s) 12, 72
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 2 cut(s) 50, 517
XceI RCATGY 1 cut(s) 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XmnI GAANNNNTTC 2 cut(s) 546, 918
XspI CTAG 2 cut(s) 585, 689
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.