RLG00000005782

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018432
Physical Location & Seq
Forward (+)
1680994 .. 1682051
1058 bp
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UTR
Exon/CDS
Intron
RLM00000005782

Sequence Viewer

Length: 495 bp
ATGAGACACAAGAGCGGACTACGCAAAAGGAAATCTCTTTGTGAGAAATCAATGGTTTTGGTGTCGAACATCATTAAGCTTTCATCTGTTTCTCTTGGTAATAAAATGAGTTGGGGAGCCACACCGACGTCAACAACAACAACAATCAGATCAGTGCAGCCAGCAGCAGCTCATTCCGGGCCTGAAACCACCAACGTCGTCAGTAGTACCAGTACTGCTGCTTCCACCGAGGTTTTACTAGACATTGAACCGCCTCAGCGTCCGAGAATAAGCCAGAAAAGGCCAGAGGAACCAGCTGCTGTTGCTCGAAACGATCATCATCAATCAAACCAAGCAAAAGTCACATCAAACATCCCTCATGATTTTTATGCTGTCACTACTCCGTCTGTACATATGAAGCGGGATCATCGAGTACCACCAGACGATGTTGATGGTCGAGCTGAAGATTTTATTCGAAGGAGGAGGCAAATCATCAACGATGTGAATAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.13

Weight (kDa)

10.15

Isoelectric Point (pI)

69.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018432)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35350
pyrus_communis pycom13g07250 pycom16g07220
rosa_laevigata RLG00000005782
rosa_roxburghii Rroxscaffold_5G00385460
rosa_rugosa Rorug04G0356800
rosa_samantha Rh4AG418400 Rh4BG430100 Rh4CG444900 Rh4DG426100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 15
AciI CCGC 3 cut(s) 15, 251, 400
AclWI GGATC 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 5 cut(s) 208, 214, 390, 414, 490
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 4 cut(s) 79, 170, 296, 440
AluI AGCT 4 cut(s) 79, 170, 296, 440
AlwI GGATC 1 cut(s) 411
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 2 cut(s) 179, 281
ApeKI GCWGC 5 cut(s) 157, 164, 167, 218, 296
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 178
AsuII TTCGAA 1 cut(s) 454
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 5 cut(s) 169, 176, 179, 205, 283
BccI CCATC 1 cut(s) 425
BcnI CCSGG 1 cut(s) 178
BfaI CTAG 1 cut(s) 239
BisI GCNGC 5 cut(s) 158, 165, 168, 219, 297
BlsI GCNGC 5 cut(s) 159, 166, 169, 220, 298
BmcAI AGTACT 2 cut(s) 214, 490
Bme1390I CCNGG 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 118, 291
BmrFI CCNGG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 318
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 475
BseXI GCAGC 5 cut(s) 169, 176, 179, 205, 283
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 2 cut(s) 181, 283
BsiSI CCGG 1 cut(s) 177
BsnI GGCC 2 cut(s) 181, 283
Bsp119I TTCGAA 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 388
Bsp143I GATC 3 cut(s) 149, 313, 403
BspACI CCGC 3 cut(s) 15, 251, 400
BspANI GGCC 2 cut(s) 181, 283
BspCNI CTCAG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 118, 291
BspPI GGATC 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 388
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 149, 313, 403
BssNI GRCGYC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 388
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 3 cut(s) 152, 316, 406
BstMBI GATC 3 cut(s) 149, 313, 403
BstMWI GCNNNNNNNGC 2 cut(s) 21, 302
BstSCI CCNGG 1 cut(s) 176
BstV1I GCAGC 5 cut(s) 169, 176, 179, 205, 283
BsuRI GGCC 2 cut(s) 181, 283
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 299
CciI TCATGA 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 1 cut(s) 248
Csp6I GTAC 5 cut(s) 207, 213, 389, 413, 489
CviAII CATG 1 cut(s) 359
CviJI RGCY 9 cut(s) 79, 119, 160, 170, 181, 273, 283, 296, 440
CviKI_1 RGCY 9 cut(s) 79, 119, 160, 170, 181, 273, 283, 296, 440
CviQI GTAC 5 cut(s) 207, 213, 389, 413, 489
DdeI CTNAG 1 cut(s) 255
DpnI GATC 3 cut(s) 151, 315, 405
DpnII GATC 3 cut(s) 149, 313, 403
Eco57I CTGAAG 1 cut(s) 462
FaeI CATG 1 cut(s) 362
FaiI YATR 4 cut(s) 360, 369, 393, 395
FatI CATG 1 cut(s) 358
FauI CCCGC 1 cut(s) 393
FauNDI CATATG 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 158, 165, 168, 219, 297
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 5 cut(s) 158, 165, 168, 219, 297
FspBI CTAG 1 cut(s) 239
GluI GCNGC 5 cut(s) 158, 165, 168, 219, 297
HaeIII GGCC 2 cut(s) 181, 283
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 362
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 77
HpaII CCGG 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 149, 264
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 2 cut(s) 130, 200
HpyAV CCTTC 1 cut(s) 450
HpyCH4IV ACGT 2 cut(s) 128, 195
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 302
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 128, 195
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 362
Kzo9I GATC 3 cut(s) 149, 313, 403
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 8 cut(s) 174, 190, 195, 223, 287, 297, 306, 432
Lsp1109I GCAGC 5 cut(s) 169, 176, 179, 205, 283
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 128, 195
MaeIII GTNAC 2 cut(s) 340, 373
MalI GATC 3 cut(s) 151, 315, 405
MbiI CCGCTC 1 cut(s) 15
MboI GATC 3 cut(s) 149, 313, 403
MboII GAAGA 1 cut(s) 455
MnlI CCTC 6 cut(s) 223, 264, 280, 366, 453, 456
MseI TTAA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 21, 302
NciI CCSGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 393
NdeII GATC 3 cut(s) 149, 313, 403
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 2 cut(s) 118, 291
NmuCI GTSAC 2 cut(s) 340, 373
NspV TTCGAA 1 cut(s) 454
PagI TCATGA 1 cut(s) 358
PkrI GCNGC 5 cut(s) 159, 166, 169, 220, 298
PspN4I GGNNCC 2 cut(s) 118, 291
PspPI GGNCC 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 5 cut(s) 208, 214, 390, 414, 490
RsaNI GTAC 5 cut(s) 207, 213, 389, 413, 489
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 5 cut(s) 158, 165, 168, 219, 297
Sau3AI GATC 3 cut(s) 149, 313, 403
Sau96I GGNCC 1 cut(s) 179
ScaI AGTACT 2 cut(s) 214, 490
ScrFI CCNGG 1 cut(s) 178
SetI ASST 7 cut(s) 81, 131, 172, 198, 234, 298, 442
SfuI TTCGAA 1 cut(s) 454
SsiI CCGC 3 cut(s) 15, 251, 400
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 176
TaiI ACGT 2 cut(s) 131, 198
TaqI TCGA 5 cut(s) 65, 307, 409, 436, 454
TatI WGTACW 3 cut(s) 212, 388, 488
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 340, 373
TseI GCWGC 5 cut(s) 157, 164, 167, 218, 296
Tsp45I GTSAC 2 cut(s) 340, 373
TspDTI ATGAA 2 cut(s) 72, 410
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 159
XspI CTAG 1 cut(s) 239
ZraI GACGTC 1 cut(s) 129
ZrmI AGTACT 2 cut(s) 214, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.