Rroxscaffold_5G00385460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018432
Physical Location & Seq
Reverse (-)
64523799 .. 64524776
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385460.1

Sequence Viewer

Length: 471 bp
ATGAGACACAAGAGCGGACTACGCAAAAGGAAATCTCTTTGTGAGAAATCAATGGTTTTGGTGTCGAACATCATTAATCTGTCATCTGTTTCTCTTGGTAAAATGAGTTGGGGTACCACGACGACGTCGACAACAACAACAATCAGATCAGTGCAGCCAGCAGCAGCTCATTCCGGGCCTGAAACCACCAACGTCATCAGTACCGAGGTTTTACTAGACATTGAACCTCCTCAGCGTCCGAGAATAAGCCGGGAAAGGCCAGAGGAACCAGCTGCTGTTGCTCGAAATGATAATCATCAATCAAACCAAGCAAAAGTCACATCAAACATCCGTCATGGTTTTTATACTGTCACTACTCCGTCTGTACATGTGAAGCGGGATCATCAAGTACCACCGGACGATGTTGATGGTCGAGCTGAAGATTTTATTCGAAGGAGGAGGCAAATCATTAACGATGTGAATAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.42

Weight (kDa)

10.18

Isoelectric Point (pI)

67.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018432)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35350
pyrus_communis pycom13g07250 pycom16g07220
rosa_laevigata RLG00000005782
rosa_roxburghii Rroxscaffold_5G00385460
rosa_rugosa Rorug04G0356800
rosa_samantha Rh4AG418400 Rh4BG430100 Rh4CG444900 Rh4DG426100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 128
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 128
AciI CCGC 2 cut(s) 15, 376
AclWI GGATC 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 5 cut(s) 115, 202, 366, 390, 466
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 3 cut(s) 167, 272, 416
AluI AGCT 3 cut(s) 167, 272, 416
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 2 cut(s) 176, 257
ApeKI GCWGC 4 cut(s) 154, 161, 164, 272
AseI ATTAAT 1 cut(s) 75
Asp718I GGTACC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 2 cut(s) 175, 251
AsuII TTCGAA 1 cut(s) 430
BanI GGYRCC 1 cut(s) 113
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 166, 173, 176, 259
BccI CCATC 1 cut(s) 401
BcnI CCSGG 2 cut(s) 175, 251
BfaI CTAG 1 cut(s) 215
BisI GCNGC 4 cut(s) 155, 162, 165, 273
BlsI GCNGC 4 cut(s) 156, 163, 166, 274
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 175, 251
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 115, 267
BmrFI CCNGG 2 cut(s) 175, 251
Bpu10I CCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 430
BpuMI CCSGG 2 cut(s) 175, 251
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 327
BseJI GATNNNNATC 1 cut(s) 294
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 2 cut(s) 219, 451
BseXI GCAGC 4 cut(s) 166, 173, 176, 259
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 2 cut(s) 178, 259
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 3 cut(s) 174, 250, 395
BsnI GGCC 2 cut(s) 178, 259
Bsp119I TTCGAA 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 364
Bsp143I GATC 2 cut(s) 146, 379
BspACI CCGC 2 cut(s) 15, 376
BspANI GGCC 2 cut(s) 178, 259
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 115, 267
BspPI GGATC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 146, 379
BssNI GRCGYC 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 2 cut(s) 149, 382
BstMBI GATC 2 cut(s) 146, 379
BstMWI GCNNNNNNNGC 2 cut(s) 21, 278
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 173, 249
BstV1I GCAGC 4 cut(s) 166, 173, 176, 259
BsuRI GGCC 2 cut(s) 178, 259
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 224
Csp6I GTAC 5 cut(s) 114, 201, 365, 389, 465
CviAII CATG 2 cut(s) 335, 368
CviJI RGCY 7 cut(s) 157, 167, 178, 249, 259, 272, 416
CviKI_1 RGCY 7 cut(s) 157, 167, 178, 249, 259, 272, 416
CviQI GTAC 5 cut(s) 114, 201, 365, 389, 465
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 148, 381
DpnII GATC 2 cut(s) 146, 379
Eco57I CTGAAG 1 cut(s) 438
FaeI CATG 2 cut(s) 338, 371
FaiI YATR 3 cut(s) 336, 345, 369
FatI CATG 2 cut(s) 334, 367
FauI CCCGC 1 cut(s) 369
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 4 cut(s) 155, 162, 165, 273
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 4 cut(s) 155, 162, 165, 273
FspBI CTAG 1 cut(s) 215
GluI GCNGC 4 cut(s) 155, 162, 165, 273
HaeIII GGCC 2 cut(s) 178, 259
HapII CCGG 3 cut(s) 174, 250, 395
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 2 cut(s) 338, 371
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HpaII CCGG 3 cut(s) 174, 250, 395
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 146, 240
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 3 cut(s) 124, 127, 130
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 125, 192
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 278
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 2 cut(s) 125, 192
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 338, 371
KpnI GGTACC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 146, 379
LpnPI CCDG 7 cut(s) 171, 187, 192, 263, 273, 282, 408
Lsp1109I GCAGC 4 cut(s) 166, 173, 176, 259
MaeI CTAG 1 cut(s) 215
MaeII ACGT 2 cut(s) 125, 192
MaeIII GTNAC 2 cut(s) 316, 349
MalI GATC 2 cut(s) 148, 381
MbiI CCGCTC 1 cut(s) 15
MboI GATC 2 cut(s) 146, 379
MboII GAAGA 1 cut(s) 431
MnlI CCTC 6 cut(s) 199, 237, 240, 256, 429, 432
MseI TTAA 2 cut(s) 75, 450
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 3 cut(s) 174, 250, 395
MspR9I CCNGG 2 cut(s) 175, 251
MwoI GCNNNNNNNGC 2 cut(s) 21, 278
NciI CCSGG 2 cut(s) 175, 251
NdeII GATC 2 cut(s) 146, 379
NlaIII CATG 2 cut(s) 338, 371
NlaIV GGNNCC 2 cut(s) 115, 267
NmuCI GTSAC 2 cut(s) 316, 349
NspI RCATGY 1 cut(s) 371
NspV TTCGAA 1 cut(s) 430
PciI ACATGT 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 124
PkrI GCNGC 4 cut(s) 156, 163, 166, 274
PscI ACATGT 1 cut(s) 367
PshBI ATTAAT 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 115, 267
PspPI GGNCC 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 275
PsyI GACNNNGTC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 5 cut(s) 115, 202, 366, 390, 466
RsaNI GTAC 5 cut(s) 114, 201, 365, 389, 465
SalI GTCGAC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 75, 450
SatI GCNGC 4 cut(s) 155, 162, 165, 273
Sau3AI GATC 2 cut(s) 146, 379
Sau96I GGNCC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 466
ScrFI CCNGG 2 cut(s) 175, 251
SetI ASST 7 cut(s) 128, 169, 195, 210, 229, 274, 418
SfuI TTCGAA 1 cut(s) 430
SsiI CCGC 2 cut(s) 15, 376
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 173, 249
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 128, 195
TaqI TCGA 5 cut(s) 65, 128, 283, 412, 430
TatI WGTACW 2 cut(s) 364, 464
Tru1I TTAA 2 cut(s) 75, 450
Tru9I TTAA 2 cut(s) 75, 450
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 2 cut(s) 316, 349
TseI GCWGC 4 cut(s) 154, 161, 164, 272
Tsp45I GTSAC 2 cut(s) 316, 349
TspGWI ACGGA 2 cut(s) 320, 348
TspRI CASTG 1 cut(s) 156
Tth111I GACNNNGTC 1 cut(s) 124
VspI ATTAAT 1 cut(s) 75
XceI RCATGY 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 1 cut(s) 215
ZraI GACGTC 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.