RLG00000007920

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
22939038 .. 22941051
2014 bp
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UTR
Exon/CDS
Intron
RLM00000007920

Sequence Viewer

Length: 447 bp
ATGGAGAAAATGATGGTGGAAGCAGAGAAACAAGTAACTAAGATTTCACTCCATGAGATTGAGGAGGCCGTTAGATTACGTGATTATTTGAAAGGGTTTAGAAGAGAAGAACTCATAGATGAGTTGTTCAACCAGTTTGGTTTACCGAAATTCACTTTTGTTAATCACCTGAGGCTCACGCTTGAGGAGATCTTACAAAAATCAAGCATCACCCAGCTGCCTTCTGTAGTGAGGGCTTTCACTTCATTAGTGCGAGGCTTTTTCACAAGTGATGTTACAAGTAGGACTCCATTGGAATTTCAATTATTTCTTGACTTCTTGGATGAGAATTGTTACAATAGGCTTTGTATGGAAAATGCTGTCAATCATCCAATTCTTCTTAACAAAGAACAACGGATTTCGTATAGGCTAGTCAATGTCAGAGGGACACTCTGGAAGAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.59

Weight (kDa)

7.8

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017805)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 149, 296
AgsI TTSAA 3 cut(s) 91, 130, 302
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 2 cut(s) 149, 296
AsuHPI GGTGA 2 cut(s) 158, 202
AxyI CCTNAGG 1 cut(s) 170
BbvI GCAGC 1 cut(s) 204
BccI CCATC 1 cut(s) 7
BceAI ACGGC 1 cut(s) 53
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 225
BglII AGATCT 1 cut(s) 189
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BmsI GCATC 1 cut(s) 216
BplI GAGNNNNNCTC 4 cut(s) 96, 128, 414, 446
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 133
Bse21I CCTNAGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 328, 367
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 77, 200
BseXI GCAGC 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 213
BshFI GGCC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 133
BssMI GATC 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 97, 431
BstBAI YACGTR 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 39, 170
BstF5I GGATG 2 cut(s) 328, 367
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
Bsu36I CCTNAGG 1 cut(s) 170
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 328, 367
CviAII CATG 1 cut(s) 53
CviJI RGCY 7 cut(s) 68, 175, 217, 236, 258, 343, 409
CviKI_1 RGCY 7 cut(s) 68, 175, 217, 236, 258, 343, 409
DdeI CTNAG 2 cut(s) 39, 170
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 97, 431
EarI CTCTTC 2 cut(s) 97, 431
Eco81I CCTNAGG 1 cut(s) 170
FaeI CATG 1 cut(s) 56
FaiI YATR 4 cut(s) 54, 116, 350, 405
FaqI GGGAC 1 cut(s) 439
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 2 cut(s) 335, 354
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 1 cut(s) 410
GluI GCNGC 1 cut(s) 218
GsaI CCCAGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 1 cut(s) 56
HinfI GANTC 1 cut(s) 286
HphI GGTGA 2 cut(s) 158, 202
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 422
Hpy188III TCNNGA 2 cut(s) 311, 433
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 39, 170
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 4 cut(s) 146, 182, 227, 418
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 3 cut(s) 34, 274, 332
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 3 cut(s) 114, 119, 368
MflI RGATCY 1 cut(s) 189
MluCI AATT 6 cut(s) 149, 296, 302, 328, 372, 442
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 8 cut(s) 55, 58, 165, 178, 225, 248, 416, 432
MseI TTAA 3 cut(s) 162, 381, 445
MspA1I CMGCKG 1 cut(s) 217
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 56
PkrI GCNGC 1 cut(s) 219
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Ppu21I YACGTR 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 213
PsuI RGATCY 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 217
SaqAI TTAA 3 cut(s) 162, 381, 445
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 1 cut(s) 280
SetI ASST 3 cut(s) 82, 171, 219
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 6 cut(s) 149, 296, 302, 328, 372, 442
SspMI CTAG 1 cut(s) 410
TaiI ACGT 1 cut(s) 82
TasI AATT 6 cut(s) 149, 296, 302, 328, 372, 442
Tru1I TTAA 3 cut(s) 162, 381, 445
Tru9I TTAA 3 cut(s) 162, 381, 445
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 409
XapI RAATTY 2 cut(s) 149, 296
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.