Rh4DG208000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017805
Physical Location & Seq
Forward (+)
40202826 .. 40204883
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG208000.1

Sequence Viewer

Length: 765 bp
ATGGAGGTGGAAGCAGAGAAACAAGTAACTAAAATTTCACTCCATGAGATTGAGGAGGCCGTTAGATTATATGATTATTTGAAAGGGTTTAGAAGCGAAGAACTCATAGATGAGTTGTTCGACCAGTTTGGTTTACCGAAATTCACTTTTGTTAATCACCTGAGGCTCACGCTTGAGGAGATCTTACAAAAATCAATCATCACCCAGCTGCCTTCTTTAGTGAGGGCTTTCACTTCATTAGTGCGAGGCTTTTTCACAGTTAGGATTCCATTGGAATTTCAATTCTTTCTTGACTTCTTGGATGAGAATTGTGACAATAGGCTTTGTATGGAAAATGCTGTCAATCATCCAATTCTTCTTAACAAAGAACAACGGATTTCATATAGGTCAGAATTCCAGTTGATGTGCGAGGATCTGAAGCTCTCTAAATATGATCATTTCTACATCATAAGAACGTTACAACATGTAATTCGTAGTAGAAATGCATCCTACCGTTGGACACACACTCTGAATCAACGACATCCACCGTCTAAGACTGAGGATTGGATCCAACTTGCATTTAAGGATTGTAAATGCTCAGATGATGCAATGTCCTTTGTGAGGTTTTGCAGACACAGTAACATACACAAGGCTAGTAAATGTCAGAGGGACACTCTGGAAGAGGAATTGACACTATTTTGGCCTGGTTTTCTTTCTCTGCTTCATGAGGCTGCTAGTAAGTGTGGACACCATATCAACCAGCGGATGGCAAACACGAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

30.19

Weight (kDa)

6.46

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017805)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0417271
rosa_laevigata RLG00000007920
rosa_multiflora Rmu_sc0002129.1_g000003
rosa_rugosa Rorug04G0146400 Rorug04G0146500.1
rosa_samantha Rh2CG165800 Rh4AG209900 Rh4BG210400 Rh4BG210600 Rh4CG221100 Rh4DG208000
rosa_wichuraiana Rw4G017750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 745
AciI CCGC 1 cut(s) 742
AclI AACGTT 1 cut(s) 455
AclWI GGATC 3 cut(s) 420, 541, 554
AcsI RAATTY 4 cut(s) 33, 140, 275, 392
AcuI CTGAAG 1 cut(s) 437
AfiI CCNNNNNNNGG 3 cut(s) 495, 600, 745
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 2 cut(s) 82, 281
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 2 cut(s) 208, 421
AluI AGCT 2 cut(s) 208, 421
AlwI GGATC 3 cut(s) 420, 541, 554
AoxI GGCC 2 cut(s) 57, 680
ApeKI GCWGC 2 cut(s) 208, 710
ApoI RAATTY 4 cut(s) 33, 140, 275, 392
AsuHPI GGTGA 2 cut(s) 149, 193
AxyI CCTNAGG 1 cut(s) 161
BamHI GGATCC 1 cut(s) 546
BauI CACGAG 1 cut(s) 754
BbvI GCAGC 2 cut(s) 195, 697
BccI CCATC 1 cut(s) 739
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 684
BclI TGATCA 1 cut(s) 433
BfaI CTAG 3 cut(s) 633, 714, 763
BglII AGATCT 1 cut(s) 180
BisI GCNGC 2 cut(s) 209, 711
BlsI GCNGC 2 cut(s) 210, 712
Bme1390I CCNGG 1 cut(s) 684
BmiI GGNNCC 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 2 cut(s) 494, 574
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpuEI CTTGAG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 3 cut(s) 495, 600, 745
Bse1I ACTGG 2 cut(s) 124, 397
Bse21I CCTNAGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 1 cut(s) 684
BseGI GGATG 5 cut(s) 307, 346, 485, 520, 750
BseLI CCNNNNNNNGG 3 cut(s) 495, 600, 745
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 3 cut(s) 152, 528, 591
BseNI ACTGG 2 cut(s) 124, 397
BseRI GAGGAG 2 cut(s) 68, 191
BseXI GCAGC 2 cut(s) 195, 697
BseYI CCCAGC 1 cut(s) 204
BshFI GGCC 2 cut(s) 59, 682
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 3 cut(s) 495, 600, 745
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 2 cut(s) 59, 682
Bsp143I GATC 4 cut(s) 180, 412, 433, 546
BspACI CCGC 1 cut(s) 742
BspANI GGCC 2 cut(s) 59, 682
BspCNI CTCAG 3 cut(s) 153, 529, 590
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 548
BspPI GGATC 3 cut(s) 420, 541, 554
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 2 cut(s) 124, 397
BssMI GATC 4 cut(s) 180, 412, 433, 546
BssSI CACGAG 1 cut(s) 754
Bst2BI CACGAG 1 cut(s) 754
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 4 cut(s) 259, 494, 528, 617
Bst6I CTCTTC 1 cut(s) 654
BstDEI CTNAG 4 cut(s) 161, 531, 537, 577
BstENI CCTNNNNNAGG 1 cut(s) 598
BstF5I GGATG 5 cut(s) 307, 346, 485, 520, 750
BstKTI GATC 4 cut(s) 183, 415, 436, 549
BstMBI GATC 4 cut(s) 180, 412, 433, 546
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 195, 697
BstX2I RGATCY 3 cut(s) 180, 412, 546
BstYI RGATCY 3 cut(s) 180, 412, 546
Bsu36I CCTNAGG 1 cut(s) 161
BsuRI GGCC 2 cut(s) 59, 682
BtsCI GGATG 5 cut(s) 307, 346, 485, 520, 750
CciI TCATGA 1 cut(s) 703
CviAII CATG 3 cut(s) 44, 464, 704
DdeI CTNAG 4 cut(s) 161, 531, 537, 577
DpnI GATC 4 cut(s) 182, 414, 435, 548
DpnII GATC 4 cut(s) 180, 412, 433, 546
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 437
Eco81I CCTNAGG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 682
EcoT22I ATGCAT 1 cut(s) 487
FaeI CATG 3 cut(s) 47, 467, 707
FaqI GGGAC 1 cut(s) 662
FatI CATG 3 cut(s) 43, 463, 703
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 209, 711
FokI GGATG 5 cut(s) 314, 333, 472, 507, 757
Fsp4HI GCNGC 2 cut(s) 209, 711
FspBI CTAG 3 cut(s) 633, 714, 763
GluI GCNGC 2 cut(s) 209, 711
GsaI CCCAGC 1 cut(s) 208
HaeIII GGCC 2 cut(s) 59, 682
Hin1II CATG 3 cut(s) 47, 467, 707
HinfI GANTC 2 cut(s) 265, 511
HphI GGTGA 2 cut(s) 149, 193
Hpy166II GTNNAC 2 cut(s) 134, 725
Hpy188I TCNGA 5 cut(s) 391, 417, 510, 580, 645
Hpy188III TCNNGA 3 cut(s) 290, 656, 704
Hpy8I GTNNAC 2 cut(s) 134, 725
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 4 cut(s) 259, 494, 528, 617
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 4 cut(s) 485, 557, 587, 609
HpyF3I CTNAG 4 cut(s) 161, 531, 537, 577
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 3 cut(s) 47, 467, 707
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 4 cut(s) 180, 412, 433, 546
LpnPI CCDG 8 cut(s) 137, 173, 218, 410, 641, 669, 696, 752
Lsp1109I GCAGC 2 cut(s) 195, 697
LweI GCATC 2 cut(s) 494, 574
MaeI CTAG 3 cut(s) 633, 714, 763
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 4 cut(s) 25, 311, 456, 617
MalI GATC 4 cut(s) 182, 414, 435, 548
MboI GATC 4 cut(s) 180, 412, 433, 546
MboII GAAGA 3 cut(s) 110, 347, 671
MflI RGATCY 3 cut(s) 180, 412, 546
MluCI AATT 9 cut(s) 33, 140, 275, 281, 307, 351, 392, 468, 665
MmeI TCCRAC 2 cut(s) 476, 574
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 3 cut(s) 153, 360, 561
MspA1I CMGCKG 2 cut(s) 208, 742
MspR9I CCNGG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 684
NdeII GATC 4 cut(s) 180, 412, 433, 546
NlaIII CATG 3 cut(s) 47, 467, 707
NlaIV GGNNCC 1 cut(s) 548
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 467
PagI TCATGA 1 cut(s) 703
PciI ACATGT 1 cut(s) 463
PfeI GAWTC 2 cut(s) 265, 511
PflMI CCANNNNNTGG 1 cut(s) 745
PkrI GCNGC 2 cut(s) 210, 712
PscI ACATGT 1 cut(s) 463
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 682
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 1 cut(s) 548
PsuI RGATCY 3 cut(s) 180, 412, 546
PvuII CAGCTG 1 cut(s) 208
SaqAI TTAA 3 cut(s) 153, 360, 561
SatI GCNGC 2 cut(s) 209, 711
Sau3AI GATC 4 cut(s) 180, 412, 433, 546
ScrFI CCNGG 1 cut(s) 684
SetI ASST 7 cut(s) 9, 162, 210, 389, 423, 458, 605
SfaNI GCATC 2 cut(s) 494, 574
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 9 cut(s) 33, 140, 275, 281, 307, 351, 392, 468, 665
SsiI CCGC 1 cut(s) 742
SspMI CTAG 3 cut(s) 633, 714, 763
StyD4I CCNGG 1 cut(s) 682
TaaI ACNGT 4 cut(s) 259, 494, 528, 617
TaiI ACGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 120
TasI AATT 9 cut(s) 33, 140, 275, 281, 307, 351, 392, 468, 665
TfiI GAWTC 2 cut(s) 265, 511
Tru1I TTAA 3 cut(s) 153, 360, 561
Tru9I TTAA 3 cut(s) 153, 360, 561
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 2 cut(s) 208, 710
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 3 cut(s) 225, 369, 692
TspGWI ACGGA 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 745
XagI CCTNNNNNAGG 1 cut(s) 598
XapI RAATTY 4 cut(s) 33, 140, 275, 392
XceI RCATGY 1 cut(s) 467
XspI CTAG 3 cut(s) 633, 714, 763
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.