Rh4BG210600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
36690678 .. 36697213
6536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG210600.1

Sequence Viewer

Length: 261 bp
ATGGTGGTGGAAGCAGAGAAACAAGTAACTAAGATTTCACTTGATGAGATTGAGGAGGCCGTTAGATTACATGATTATTTGAAAGGGTTCAGAAGAGAAGAACTCATAGATGAGTTGTTCGACCAGTTTGGTTTACCGAAATGCACTTCTGTTAATCACCTGAGGCTCACGCTTGAGGAGATCTTACAAAAATCAATCATCACCCAGCTGCCTACTTTATGTGTGAACTTCAAGTGTTTCAAGTGTTTCACGCTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.02

Weight (kDa)

5.33

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017805)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 82, 232, 241
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 149, 193
AxyI CCTNAGG 1 cut(s) 161
BbvI GCAGC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 180
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpuEI CTTGAG 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 124
Bse21I CCTNAGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 68, 191
BseXI GCAGC 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 204
BshFI GGCC 1 cut(s) 59
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 180
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 124
BssMI GATC 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 30, 161
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
Bsu36I CCTNAGG 1 cut(s) 161
BsuRI GGCC 1 cut(s) 59
CviAII CATG 1 cut(s) 71
CviJI RGCY 3 cut(s) 59, 166, 208
CviKI_1 RGCY 3 cut(s) 59, 166, 208
DdeI CTNAG 2 cut(s) 30, 161
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 161
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 72, 107, 220
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 209
GluI GCNGC 1 cut(s) 209
GsaI CCCAGC 1 cut(s) 208
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 1 cut(s) 74
HphI GGTGA 2 cut(s) 149, 193
Hpy166II GTNNAC 2 cut(s) 134, 226
Hpy188I TCNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 134, 226
HpyCH4V TGCA 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 30, 161
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 3 cut(s) 137, 173, 218
Lsp1109I GCAGC 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 105, 110
MflI RGATCY 1 cut(s) 180
MnlI CCTC 4 cut(s) 46, 49, 156, 169
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 208
NdeII GATC 1 cut(s) 180
NlaIII CATG 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 1 cut(s) 180
SetI ASST 2 cut(s) 162, 210
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
TaqI TCGA 1 cut(s) 120
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.