Rh4AG209900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017805
Physical Location & Seq
Forward (+)
50267723 .. 50269803
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG209900.1

Sequence Viewer

Length: 777 bp
ATGGAGGTGGAAGCAGAGATACAAGTAACTAAAATTTCACTCCATGAGATTGAGGAGGCCGTTAGATTATGTGATTATTTGAAAGGGTTTAGAAGAGAAGAACTCATAGATAAGTTGTTCGACCAGTTTGGTTTACCGAAATTCACTTTTGTTAATCACCTGAGGCTCACGCTTGAGGAGATCTTACAAAAATCAATCATCACCCAGCTGCCTTCTTTAGTGAGGGCTTTCACTTCATTAGTGCGAGGCTTTTTCACAGTTAGGATTCCATTGGATTTTCAATTCTTTCTTGACTTCTTGGATGAGAATTGTGACAATAGGCTTTGTATGGAAAATGCTGTCAATCATCCAATTCTTCTTAACAAAGAACAACGGATTTCATATAGGTCAGAATTCCAGTTGATGTGCGAGGATCTGAAGCTCTCTGAATATGATCATTTCTACATCATAAGAACGTTACAACATGTAATTCGTTGTAGAAATGCATCCTACTGTTGGACACACACTCTGAATCAACGACATCCACCGTCTAAGTCTGAGGATTGGATCCAACTTGCATTTAAGGATTGTAAATGCACAGAAACGTACACAGATGATGCAATGTCCTTTGTGAGGTTTTGCAGCCACACTAACCTACACAAGCCTAGTAAATGTCAGAGGGACACTCTGGAAGAGGAATTAACGCTATTTTGGCCTGGTTTTCTTTCTCTGCTCCATGAGGCTGCTAGTAAGTGTGGAATCCATATCAACCAGCGGATGGCAAACATGAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

30.6

Weight (kDa)

6.0

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017805)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0417271
rosa_laevigata RLG00000007920
rosa_multiflora Rmu_sc0002129.1_g000003
rosa_rugosa Rorug04G0146400 Rorug04G0146500.1
rosa_samantha Rh2CG165800 Rh4AG209900 Rh4BG210400 Rh4BG210600 Rh4CG221100 Rh4DG208000
rosa_wichuraiana Rw4G017750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 757
AciI CCGC 1 cut(s) 754
AclI AACGTT 1 cut(s) 455
AclWI GGATC 3 cut(s) 420, 541, 554
AcsI RAATTY 3 cut(s) 33, 140, 392
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 3 cut(s) 495, 612, 757
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 2 cut(s) 82, 281
AjnI CCWGG 1 cut(s) 694
AluBI AGCT 2 cut(s) 208, 421
AluI AGCT 2 cut(s) 208, 421
AlwI GGATC 3 cut(s) 420, 541, 554
AoxI GGCC 2 cut(s) 57, 692
ApeKI GCWGC 3 cut(s) 208, 621, 722
ApoI RAATTY 3 cut(s) 33, 140, 392
AsuHPI GGTGA 2 cut(s) 149, 193
AxyI CCTNAGG 1 cut(s) 161
BamHI GGATCC 1 cut(s) 546
BarI GAAGNNNNNNTAC 1 cut(s) 35
BbvI GCAGC 3 cut(s) 195, 633, 709
BccI CCATC 1 cut(s) 751
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 433
BfaI CTAG 3 cut(s) 645, 726, 775
BglII AGATCT 1 cut(s) 180
BisI GCNGC 3 cut(s) 209, 622, 723
BlsI GCNGC 3 cut(s) 210, 623, 724
Bme1390I CCNGG 1 cut(s) 696
BmiI GGNNCC 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 494, 586
BplI GAGNNNNNCTC 4 cut(s) 87, 119, 649, 681
BpuEI CTTGAG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 3 cut(s) 495, 612, 757
Bse1I ACTGG 2 cut(s) 124, 397
Bse21I CCTNAGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 606
BseBI CCWGG 1 cut(s) 696
BseGI GGATG 5 cut(s) 307, 346, 485, 520, 762
BseLI CCNNNNNNNGG 3 cut(s) 495, 612, 757
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 2 cut(s) 152, 528
BseNI ACTGG 2 cut(s) 124, 397
BseRI GAGGAG 2 cut(s) 68, 191
BseXI GCAGC 3 cut(s) 195, 633, 709
BseYI CCCAGC 1 cut(s) 204
BshFI GGCC 2 cut(s) 59, 694
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 3 cut(s) 495, 612, 757
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 2 cut(s) 59, 694
Bsp143I GATC 4 cut(s) 180, 412, 433, 546
BspACI CCGC 1 cut(s) 754
BspANI GGCC 2 cut(s) 59, 694
BspCNI CTCAG 2 cut(s) 153, 529
BspLI GGNNCC 1 cut(s) 548
BspPI GGATC 3 cut(s) 420, 541, 554
BsrDI GCAATG 1 cut(s) 606
BsrI ACTGG 2 cut(s) 124, 397
BssMI GATC 4 cut(s) 180, 412, 433, 546
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 3 cut(s) 259, 494, 528
Bst6I CTCTTC 2 cut(s) 88, 666
BstDEI CTNAG 3 cut(s) 161, 531, 537
BstENI CCTNNNNNAGG 1 cut(s) 610
BstF5I GGATG 5 cut(s) 307, 346, 485, 520, 762
BstKTI GATC 4 cut(s) 183, 415, 436, 549
BstMBI GATC 4 cut(s) 180, 412, 433, 546
BstMWI GCNNNNNNNGC 1 cut(s) 691
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 694
BstV1I GCAGC 3 cut(s) 195, 633, 709
BstX2I RGATCY 3 cut(s) 180, 412, 546
BstYI RGATCY 3 cut(s) 180, 412, 546
Bsu36I CCTNAGG 1 cut(s) 161
BsuRI GGCC 2 cut(s) 59, 694
BtsCI GGATG 5 cut(s) 307, 346, 485, 520, 762
Csp6I GTAC 1 cut(s) 586
CviAII CATG 4 cut(s) 44, 464, 716, 766
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 3 cut(s) 161, 531, 537
DpnI GATC 4 cut(s) 182, 414, 435, 548
DpnII GATC 4 cut(s) 180, 412, 433, 546
Eam1104I CTCTTC 2 cut(s) 88, 666
EarI CTCTTC 2 cut(s) 88, 666
Eco57I CTGAAG 1 cut(s) 437
Eco81I CCTNAGG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 610
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 694
EcoT22I ATGCAT 1 cut(s) 487
FaeI CATG 4 cut(s) 47, 467, 719, 769
FaqI GGGAC 1 cut(s) 674
FatI CATG 4 cut(s) 43, 463, 715, 765
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 209, 622, 723
FokI GGATG 5 cut(s) 314, 333, 472, 507, 769
Fsp4HI GCNGC 3 cut(s) 209, 622, 723
FspBI CTAG 3 cut(s) 645, 726, 775
GluI GCNGC 3 cut(s) 209, 622, 723
GsaI CCCAGC 1 cut(s) 208
HaeIII GGCC 2 cut(s) 59, 694
Hin1II CATG 4 cut(s) 47, 467, 719, 769
HinfI GANTC 3 cut(s) 265, 511, 738
HphI GGTGA 2 cut(s) 149, 193
Hpy166II GTNNAC 2 cut(s) 134, 588
Hpy188I TCNGA 6 cut(s) 391, 417, 427, 510, 538, 657
Hpy188III TCNNGA 2 cut(s) 290, 668
Hpy8I GTNNAC 2 cut(s) 134, 588
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 3 cut(s) 259, 494, 528
HpyCH4IV ACGT 2 cut(s) 455, 584
HpyCH4V TGCA 5 cut(s) 485, 557, 576, 599, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 691
HpyF3I CTNAG 3 cut(s) 161, 531, 537
HpySE526I ACGT 2 cut(s) 455, 584
Hsp92II CATG 4 cut(s) 47, 467, 719, 769
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 4 cut(s) 180, 412, 433, 546
LmnI GCTCC 1 cut(s) 717
LpnPI CCDG 8 cut(s) 137, 173, 218, 410, 653, 681, 708, 764
Lsp1109I GCAGC 3 cut(s) 195, 633, 709
LweI GCATC 2 cut(s) 494, 586
MaeI CTAG 3 cut(s) 645, 726, 775
MaeII ACGT 2 cut(s) 455, 584
MaeIII GTNAC 3 cut(s) 25, 311, 456
MalI GATC 4 cut(s) 182, 414, 435, 548
MboI GATC 4 cut(s) 180, 412, 433, 546
MboII GAAGA 4 cut(s) 105, 110, 347, 683
MflI RGATCY 3 cut(s) 180, 412, 546
MluCI AATT 8 cut(s) 33, 140, 281, 307, 351, 392, 468, 677
MmeI TCCRAC 2 cut(s) 476, 574
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 4 cut(s) 153, 360, 561, 680
MspA1I CMGCKG 2 cut(s) 208, 754
MspR9I CCNGG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 1 cut(s) 691
NdeII GATC 4 cut(s) 180, 412, 433, 546
NlaIII CATG 4 cut(s) 47, 467, 719, 769
NlaIV GGNNCC 1 cut(s) 548
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 467
PciI ACATGT 1 cut(s) 463
PfeI GAWTC 3 cut(s) 265, 511, 738
PflMI CCANNNNNTGG 1 cut(s) 757
PkrI GCNGC 3 cut(s) 210, 623, 724
PscI ACATGT 1 cut(s) 463
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 548
PsuI RGATCY 3 cut(s) 180, 412, 546
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
SaqAI TTAA 4 cut(s) 153, 360, 561, 680
SatI GCNGC 3 cut(s) 209, 622, 723
Sau3AI GATC 4 cut(s) 180, 412, 433, 546
ScrFI CCNGG 1 cut(s) 696
SetI ASST 9 cut(s) 9, 162, 210, 389, 423, 458, 587, 617, 636
SfaNI GCATC 2 cut(s) 494, 586
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 8 cut(s) 33, 140, 281, 307, 351, 392, 468, 677
SsiI CCGC 1 cut(s) 754
SspMI CTAG 3 cut(s) 645, 726, 775
StyD4I CCNGG 1 cut(s) 694
TaaI ACNGT 3 cut(s) 259, 494, 528
TaiI ACGT 2 cut(s) 458, 587
TaqI TCGA 1 cut(s) 120
TasI AATT 8 cut(s) 33, 140, 281, 307, 351, 392, 468, 677
TfiI GAWTC 3 cut(s) 265, 511, 738
Tru1I TTAA 4 cut(s) 153, 360, 561, 680
Tru9I TTAA 4 cut(s) 153, 360, 561, 680
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 3 cut(s) 208, 621, 722
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 225, 369
TspGWI ACGGA 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 757
XagI CCTNNNNNAGG 1 cut(s) 610
XapI RAATTY 3 cut(s) 33, 140, 392
XceI RCATGY 1 cut(s) 467
XspI CTAG 3 cut(s) 645, 726, 775
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.