RLG00000008038

Folate-biopterin transporter 1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
24769462 .. 24773479
4018 bp
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UTR
Exon/CDS
Intron
RLM00000008038

Sequence Viewer

Length: 1704 bp
ATGGACTCCCACACCTTTTCCTTGGTCTCAATCTTACCTTCCAGAAACCCAATTTTGTCCTCGGCCTCCTTCGCTGCTCCGCCACGCCTTGTGTCTTGGATCCGCCGGAAACCGAGCACCCTGGTCGTCGGGTCCCACAGAAGAACTCGCCACCGGCGCAGAACCCGACGGAGACTTCTCCAGGACGACATGTCGGTCGCCATTCCCATGCCCTCACCGCCTTTCCGGCAGCACTTGGACGACGAGCCGTTCCTCGATTCCAGAATCAGGGTTGGAGAAAGAGATGTGATGATAAGTAATAAGGAGGGAGAGACAAACATGTCCTCTCCAAGCAAAACAGCTCCTCATAAGAACAAACATGGAGTGAGCTATGCCAAATTCTTTGGGGTGGATTTGTCGCCTGATAATGTGGCTGTTGCCATGGTGTATTTTGTTCAAGGCGTTTTAGGCCTCGCGAGGCTCGCAGTCAGTTTTTATATGAAAGATGATTTGCATTTAGACCCTGCTGAGACAGCTATAATATCCGGCTTTTCTGCATTACCATGGCTCATTAAACCTGTATATGGGTTTATCAGTGATTCTGTTCCACTGTTTGGATACCGAAGAAGGTCCTACTTGATTTTATCTGGGCTACTCGGTGCACTGTCATGGAGCTTGATGGCCACTGTAGTTGATGACAAGTTTAGCGTTGCTTTTTGCATACTTCTTGGATCTCTTTCTGTTGCCTTCTCAGATGTTGTTGTAGATTCCATGGTTGTGGAAAGGGCTCGTGGTGAGTCACAAAGCATGTCAGGTTCTCTTCAATCTTTGTGTTGGGGTTCTTCGGCTTTTGGTGGAATAGTGAGTTCCTACTTCAGTGGCTCATTGGTGGATGCTTATGGTGTAAGGTTTGTTTTTGGTATCACGGCTTTGCTACCACTTATGACATCTGCAGTTGCTCTTCTTGTAAATGAGCAGCCTATGCTTGGTGTGGCAAAAGGGTCAAATTTTCCTTTGGTGGGTCATAACATTCTCGAAAGCTGGAAACAGAGTGCAATTCAGTTATGGGGTGCCATCAAGCATCCCAATGTGTTCTTTCCCACGTTATTTATTTTCTTGTGGCAGGCAACCCCCCATTCGGAGTCAGCCATGTTTTACTTCACCACAAATAAACTTCATTTTAACCCAGAATTTCTAGGACGTGTCAAGCTTGTTACCTCAGTAGCATCACTGCTTGGTGTTGGACTGTATAATGGATTTTTGAAATATGTTCCATTGCGGAAGATTTTTTTTGTAACAACTGTTTTTGGTTCAGCCATTGGGATGACTCAGGTTATCCTTGTTACTGGATTAAATCGGAAATTTGGTATAAGTGATGAGTGGTTTGCAATTGGGGATTCTCTGATTATAACAGTTCTTGGTCAGGCTTCTTTCATGCCCGTTCTTGTGTTAGCTGCTAGATTATGCCCAGAGGGAGTGGAAGCAACACTGTTTGCAACCCTCATGTCCATATCAAATGCAGGGAGTGTCCTTGGGGGGCTGATTGGTGCTGGTCTGACACAGCTTCTTGGTGTAACCAGAGACAGTTTTGATAACTTGGCCTTTTTAATCATCCTGTGCAATCTCAGCTCATTGTTGCCTTTACCACTCCTTGTCCTACTTCCACAGGATCGCCTTGATGCCAAGCCAGAGGAGAGTGAAGATATTGAGATGAAGTCTAATTGA

Protein Analysis

568

Amino Acids

62.01

Weight (kDa)

9.03

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 146 - 562 1.1e-147 BT1 family
MFS_1 PF07690 152 - 434 2.8e-12 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1388
AasI GACNNNNNNGTC 2 cut(s) 194, 319
AccB1I GGYRCC 1 cut(s) 1049
AccB7I CCANNNNNTGG 1 cut(s) 593
AccII CGCG 1 cut(s) 455
AciI CCGC 4 cut(s) 80, 103, 218, 1258
AclWI GGATC 4 cut(s) 94, 107, 718, 1656
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 4 cut(s) 377, 985, 1169, 1340
AcuI CTGAAG 1 cut(s) 838
AfiI CCNNNNNNNGG 6 cut(s) 267, 563, 593, 965, 998, 1117
AflIII ACRYGT 3 cut(s) 189, 318, 1180
AgsI TTSAA 3 cut(s) 437, 803, 1243
AhdI GACNNNNNGTC 1 cut(s) 190
AjiI CACGTC 1 cut(s) 1181
AjnI CCWGG 2 cut(s) 120, 180
AluBI AGCT 9 cut(s) 341, 369, 515, 654, 1020, 1189, 1433, 1543, 1608
AluI AGCT 9 cut(s) 341, 369, 515, 654, 1020, 1189, 1433, 1543, 1608
Alw21I GWGCWC 2 cut(s) 119, 643
Alw26I GTCTC 5 cut(s) 31, 166, 305, 503, 1554
Alw44I GTGCAC 1 cut(s) 639
AlwI GGATC 4 cut(s) 94, 107, 718, 1656
AoxI GGCC 4 cut(s) 63, 448, 660, 1578
ApaLI GTGCAC 1 cut(s) 639
ApeKI GCWGC 4 cut(s) 74, 229, 955, 1433
ApoI RAATTY 4 cut(s) 377, 985, 1169, 1340
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 132, 609
AsuHPI GGTGA 3 cut(s) 207, 785, 1132
AvaII GGWCC 2 cut(s) 132, 609
BaeGI GKGCMC 1 cut(s) 643
BalI TGGCCA 1 cut(s) 662
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 1049
BanII GRGCYC 1 cut(s) 769
BauI CACGAG 1 cut(s) 768
Bbv12I GWGCWC 2 cut(s) 119, 643
BbvI GCAGC 4 cut(s) 61, 241, 967, 1420
BccI CCATC 2 cut(s) 652, 1061
BceAI ACGGC 2 cut(s) 232, 921
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 2 cut(s) 122, 182
BciVI GTATCC 1 cut(s) 590
BcoDI GTCTC 5 cut(s) 31, 166, 305, 503, 1554
BfaI CTAG 2 cut(s) 1175, 1437
BfmI CTRYAG 2 cut(s) 666, 930
BfuI GTATCC 1 cut(s) 590
BglI GCCNNNNNGGC 1 cut(s) 226
BisI GCNGC 4 cut(s) 75, 230, 956, 1434
BlsI GCNGC 4 cut(s) 76, 231, 957, 1435
Bme1390I CCNGG 2 cut(s) 122, 182
Bme18I GGWCC 2 cut(s) 132, 609
BmeRI GACNNNNNGTC 1 cut(s) 190
BmgBI CACGTC 1 cut(s) 1181
BmgT120I GGNCC 2 cut(s) 132, 609
BmiI GGNNCC 4 cut(s) 101, 133, 134, 1051
BmrFI CCNGG 2 cut(s) 122, 182
BmsI GCATC 4 cut(s) 862, 1069, 1214, 1648
BpmI CTGGAG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 7 cut(s) 21, 60, 120, 420, 542, 750, 1510
Bsc4I CCNNNNNNNGG 6 cut(s) 267, 563, 593, 965, 998, 1117
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 1330
Bse3DI GCAATG 1 cut(s) 1253
BseBI CCWGG 2 cut(s) 122, 182
BseDI CCNNGG 7 cut(s) 21, 60, 120, 420, 542, 750, 1510
BseGI GGATG 4 cut(s) 877, 1060, 1308, 1590
BseLI CCNNNNNNNGG 6 cut(s) 267, 563, 593, 965, 998, 1117
BseMI GCAATG 1 cut(s) 1253
BseMII CTCAG 5 cut(s) 498, 744, 1212, 1322, 1618
BseNI ACTGG 1 cut(s) 1330
BseRI GAGGAG 2 cut(s) 333, 1685
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 4 cut(s) 61, 241, 967, 1420
Bsh1236I CGCG 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 4 cut(s) 65, 450, 662, 1580
BshNI GGYRCC 1 cut(s) 1049
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 119, 643
BsiSI CCGG 4 cut(s) 106, 154, 226, 525
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 6 cut(s) 267, 563, 593, 965, 998, 1117
BsmAI GTCTC 5 cut(s) 31, 166, 305, 503, 1554
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 4 cut(s) 65, 450, 662, 1580
Bso31I GGTCTC 1 cut(s) 31
Bsp1286I GDGCHC 3 cut(s) 119, 643, 769
Bsp143I GATC 3 cut(s) 99, 710, 1648
Bsp19I CCATGG 3 cut(s) 420, 542, 750
Bsp68I TCGCGA 1 cut(s) 455
BspACI CCGC 4 cut(s) 80, 103, 218, 1258
BspANI GGCC 4 cut(s) 65, 450, 662, 1580
BspCNI CTCAG 5 cut(s) 499, 743, 1211, 1321, 1617
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 4 cut(s) 101, 133, 134, 1051
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 4 cut(s) 94, 107, 718, 1656
BspQI GCTCTTC 1 cut(s) 945
BspT107I GGYRCC 1 cut(s) 1049
BspTNI GGTCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 1253
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 1 cut(s) 1330
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 7 cut(s) 21, 60, 120, 420, 542, 750, 1510
BssMI GATC 3 cut(s) 99, 710, 1648
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 5 cut(s) 21, 420, 542, 750, 1510
Bst2BI CACGAG 1 cut(s) 768
Bst2UI CCWGG 2 cut(s) 122, 182
Bst4CI ACNGT 8 cut(s) 591, 645, 667, 1227, 1282, 1393, 1470, 1565
Bst6I CTCTTC 2 cut(s) 804, 945
BstAPI GCANNNNNTGC 1 cut(s) 961
BstC8I GCNNGC 2 cut(s) 462, 1104
BstDEI CTNAG 5 cut(s) 507, 730, 1198, 1308, 1604
BstDSI CCRYGG 3 cut(s) 420, 542, 750
BstF5I GGATG 4 cut(s) 877, 1060, 1308, 1590
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 3 cut(s) 102, 713, 1651
BstMAI GTCTC 5 cut(s) 31, 166, 305, 503, 1554
BstMBI GATC 3 cut(s) 99, 710, 1648
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 9 cut(s) 71, 156, 217, 226, 447, 461, 512, 961, 1605
BstNI CCWGG 2 cut(s) 122, 182
BstNSI RCATGY 3 cut(s) 193, 322, 790
BstSCI CCNGG 2 cut(s) 120, 180
BstSFI CTRYAG 2 cut(s) 666, 930
BstSLI GKGCMC 1 cut(s) 643
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 4 cut(s) 61, 241, 967, 1420
BstX2I RGATCY 2 cut(s) 99, 710
BstXI CCANNNNNNTGG 1 cut(s) 757
BstYI RGATCY 2 cut(s) 99, 710
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 4 cut(s) 65, 450, 662, 1580
BtgI CCRYGG 3 cut(s) 420, 542, 750
BtrI CACGTC 1 cut(s) 1181
BtsCI GGATG 4 cut(s) 877, 1060, 1308, 1590
BtsI GCAGTG 1 cut(s) 1208
BtsIMutI CAGTG 7 cut(s) 580, 587, 641, 663, 862, 1208, 1466
BtuMI TCGCGA 1 cut(s) 455
Cac8I GCNNGC 2 cut(s) 462, 1104
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 132, 609
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
DdeI CTNAG 5 cut(s) 507, 730, 1198, 1308, 1604
DpnI GATC 3 cut(s) 101, 712, 1650
DpnII GATC 3 cut(s) 99, 710, 1648
DrdI GACNNNNNNGTC 2 cut(s) 194, 319
DriI GACNNNNNGTC 1 cut(s) 190
DseDI GACNNNNNNGTC 2 cut(s) 194, 319
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 804, 945
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 2 cut(s) 804, 945
EciI GGCGGA 2 cut(s) 69, 92
Eco130I CCWWGG 5 cut(s) 21, 420, 542, 750, 1510
Eco147I AGGCCT 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 31
Eco47I GGWCC 2 cut(s) 132, 609
Eco57I CTGAAG 1 cut(s) 838
EcoO109I RGGNCCY 2 cut(s) 132, 609
EcoRII CCWGG 2 cut(s) 120, 180
EcoT14I CCWWGG 5 cut(s) 21, 420, 542, 750, 1510
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 5 cut(s) 21, 420, 542, 750, 1510
FaqI GGGAC 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 75, 230, 956, 1434
FokI GGATG 4 cut(s) 884, 1047, 1315, 1577
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 4 cut(s) 75, 230, 956, 1434
FspBI CTAG 2 cut(s) 1175, 1437
GlaI GCGC 1 cut(s) 158
GluI GCNGC 4 cut(s) 75, 230, 956, 1434
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 4 cut(s) 65, 450, 662, 1580
HapII CCGG 4 cut(s) 106, 154, 226, 525
HhaI GCGC 1 cut(s) 159
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 1187
HinfI GANTC 9 cut(s) 5, 257, 264, 578, 746, 776, 1121, 1306, 1376
HpaII CCGG 4 cut(s) 106, 154, 226, 525
HphI GGTGA 3 cut(s) 207, 785, 1132
Hpy166II GTNNAC 1 cut(s) 641
Hpy188I TCNGA 5 cut(s) 733, 1120, 1338, 1383, 1536
Hpy188III TCNNGA 4 cut(s) 42, 261, 454, 1013
Hpy8I GTNNAC 1 cut(s) 641
Hpy99I CGWCG 3 cut(s) 131, 171, 245
HpyAV CCTTC 4 cut(s) 48, 79, 600, 736
HpyCH4III ACNGT 8 cut(s) 591, 645, 667, 1227, 1282, 1393, 1470, 1565
HpyCH4IV ACGT 2 cut(s) 1082, 1180
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 156, 217, 226, 447, 461, 512, 961, 1605
HpyF3I CTNAG 5 cut(s) 507, 730, 1198, 1308, 1604
HpySE526I ACGT 2 cut(s) 1082, 1180
HspAI GCGC 1 cut(s) 157
KflI GGGWCCC 1 cut(s) 132
Kzo9I GATC 3 cut(s) 99, 710, 1648
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 3 cut(s) 82, 346, 651
Lsp1109I GCAGC 4 cut(s) 61, 241, 967, 1420
LweI GCATC 4 cut(s) 862, 1069, 1214, 1648
MaeI CTAG 2 cut(s) 1175, 1437
MaeII ACGT 2 cut(s) 1082, 1180
MaeIII GTNAC 5 cut(s) 777, 1192, 1273, 1321, 1552
MalI GATC 3 cut(s) 101, 712, 1650
MboI GATC 3 cut(s) 99, 710, 1648
MboII GAAGA 7 cut(s) 153, 615, 791, 813, 932, 1273, 1691
MfeI CAATTG 1 cut(s) 1368
MflI RGATCY 2 cut(s) 99, 710
MhlI GDGCHC 3 cut(s) 119, 643, 769
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 8 cut(s) 51, 377, 985, 1035, 1169, 1340, 1368, 1699
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 3 cut(s) 785, 1130, 1300
MmeI TCCRAC 2 cut(s) 253, 1201
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
MseI TTAA 4 cut(s) 552, 1161, 1331, 1586
MslI CAYNNNNRTG 6 cut(s) 206, 541, 646, 755, 1065, 1301
Msp20I TGGCCA 1 cut(s) 662
MspI CCGG 4 cut(s) 106, 154, 226, 525
MspR9I CCNGG 2 cut(s) 122, 182
MunI CAATTG 1 cut(s) 1368
MvaI CCWGG 2 cut(s) 122, 182
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 9 cut(s) 71, 156, 217, 226, 447, 461, 512, 961, 1605
NcoI CCATGG 3 cut(s) 420, 542, 750
NdeII GATC 3 cut(s) 99, 710, 1648
NlaIV GGNNCC 4 cut(s) 101, 133, 134, 1051
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 777
NruI TCGCGA 1 cut(s) 455
NspI RCATGY 3 cut(s) 193, 322, 790
PceI AGGCCT 1 cut(s) 450
PciI ACATGT 2 cut(s) 189, 318
PciSI GCTCTTC 1 cut(s) 945
PfeI GAWTC 5 cut(s) 257, 264, 578, 746, 1376
PflMI CCANNNNNTGG 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 4 cut(s) 76, 231, 957, 1435
PleI GAGTC 3 cut(s) 784, 1129, 1300
PpsI GAGTC 3 cut(s) 784, 1129, 1300
PpuMI RGGWCCY 2 cut(s) 132, 609
PscI ACATGT 2 cut(s) 189, 318
PsiI TTATAA 1 cut(s) 1388
Psp5II RGGWCCY 2 cut(s) 132, 609
Psp6I CCWGG 2 cut(s) 120, 180
PspGI CCWGG 2 cut(s) 120, 180
PspN4I GGNNCC 4 cut(s) 101, 133, 134, 1051
PspPI GGNCC 2 cut(s) 132, 609
PspPPI RGGWCCY 2 cut(s) 132, 609
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 2 cut(s) 99, 710
RruI TCGCGA 1 cut(s) 455
RseI CAYNNNNRTG 6 cut(s) 206, 541, 646, 755, 1065, 1301
SapI GCTCTTC 1 cut(s) 945
SaqAI TTAA 4 cut(s) 552, 1161, 1331, 1586
SatI GCNGC 4 cut(s) 75, 230, 956, 1434
Sau3AI GATC 3 cut(s) 99, 710, 1648
Sau96I GGNCC 2 cut(s) 132, 609
SchI GAGTC 3 cut(s) 785, 1130, 1300
ScrFI CCNGG 2 cut(s) 122, 182
SduI GDGCHC 3 cut(s) 119, 643, 769
SfaNI GCATC 4 cut(s) 862, 1069, 1214, 1648
SfcI CTRYAG 2 cut(s) 666, 930
SgrAI CRCCGGYG 1 cut(s) 153
SinI GGWCC 2 cut(s) 132, 609
SmiMI CAYNNNNRTG 6 cut(s) 206, 541, 646, 755, 1065, 1301
Sse9I AATT 8 cut(s) 51, 377, 985, 1035, 1169, 1340, 1368, 1699
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 4 cut(s) 80, 103, 218, 1258
SspMI CTAG 2 cut(s) 1175, 1437
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 120, 180
StyI CCWWGG 5 cut(s) 21, 420, 542, 750, 1510
TaaI ACNGT 8 cut(s) 591, 645, 667, 1227, 1282, 1393, 1470, 1565
TaiI ACGT 2 cut(s) 1085, 1183
TaqI TCGA 2 cut(s) 255, 1014
TaqII GACCGA 1 cut(s) 184
TasI AATT 8 cut(s) 51, 377, 985, 1035, 1169, 1340, 1368, 1699
TfiI GAWTC 5 cut(s) 257, 264, 578, 746, 1376
Tru1I TTAA 4 cut(s) 552, 1161, 1331, 1586
Tru9I TTAA 4 cut(s) 552, 1161, 1331, 1586
TscAI CASTG 7 cut(s) 580, 594, 648, 670, 862, 1215, 1473
TseFI GTSAC 1 cut(s) 777
TseI GCWGC 4 cut(s) 74, 229, 955, 1433
Tsp45I GTSAC 1 cut(s) 777
TspDTI ATGAA 3 cut(s) 494, 1145, 1402
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 7 cut(s) 580, 594, 648, 670, 862, 1215, 1473
Van91I CCANNNNNTGG 1 cut(s) 593
VneI GTGCAC 1 cut(s) 639
VpaK11BI GGWCC 2 cut(s) 132, 609
XapI RAATTY 4 cut(s) 377, 985, 1169, 1340
XceI RCATGY 3 cut(s) 193, 322, 790
XspI CTAG 2 cut(s) 1175, 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.