Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009095

Physical Location & Seq

Genomic Coordinates Forward (+)

39816101 .. 39821134

Gene Structure 5034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGTCGGTCGCCATTCCCATGCCCTCACCGCTTTCCCGGCAGCACTTGGACGACGAGCCGTTCCTCGATTCCAGAATCAGGGTTGGAGAAAGAGATGTGATGATAAGTAATAAGGAGGGAGAGACAAACATGCCCTCTCCAAGCAAAACAGCTCCTCACAAGAACAAACATGGAGTGAGCTATGCCAAATTCTTTGGGGTGGATTTGTCGCCTGATAATGTGGCTGTTGCCATGGTATATTTTGTTCAAGGCGTTTTAGGCCTCGCGAGGCTCGCAGTCAGTTTTTATATGAAAGACGATTTGCATTTAGACCCTGCTGAGACAGCTGTAATATCCGGCTTTTCTGCATTACCATGGCTCATTAAACCTGTATATGGGTTTATCAGTGATTCTGTCCCACTGTTTGGATACCGAAGGAGGTCCTACTTGCTTTTATCTGGGCTACTTGGTGCACTATCATGGAGCTTGATGGCCACTGTAGTTGATGACAAGTTTAGCGTTGCGTTTTGCATACTTCTTGGATCTCTTTCTGTTGCCTTCTCAGATGTTGTTGTAGATTCCATGGTTGTAGAAAGGGCTCGTGGTGAGTCACAAAGCATGTCAGGTTCTCTTCAATCTTTGTGTTGGGGTTCTTCGGCTTTTGGTGGAATAGTGAGTTCCTACTTTAGTGGCTCATTGGTGGATGCTTATGGTGTAAGGTTTGTTTTTGGTATCACGGCTTTGCTACCACTTATGACATCTGCAGTTGCACTTCTTGTAAATGAGCAGCCTATGCTTGGTGTGGCAAAAGGGTCAAATTTTCCTTTGGTGGGTCATAACATTCTCGAAAGCTGGAAACAGAGTGCAATTCAGTTATGGGGTGCCATCAAGCATCCCAATGTGTTCTTTCCCACGTTATTTATTTTCTTGTGGCAGGCGACCCCCCATTCGGAGTCAGCCATGTTTTACTTCACCACAAATAAACTTCATTTTACCCCAGAATTTCTAGGACGTGTCAAGCTTGTTACCTCAGTAGCATCACTGCTTGCCATTGGGATGACTCAGGTTATCCTTGTTACTGGATTAAATCGGAAATTTGGCATAAGTGATGAGTGGTTTGCAATTGGGGATTCTCTGATTATAACAGTTCTTGGTCAGGCTTCTTTCATGCCCGTTCTTGTGTTAGCTGCTAGATTATGCCCAGAGGGAGTGGAAGCAACACTGTTTGCAACCCTCATGTCCATATCAAATGCAGGGAGTGTCCTTGGGGGGCTGATGGGTGCTGGTCTGACACAGCTTCTTGGTGTAACCAGAGACAGTTTTGATAACTTGGCCTTTTTAATCATCCTGTGTAATCTCAGCTCATTGTTGCCTTTACCACTCCTTGGCCTACTTCCGCAGGATCGCCTTGATGCCAAGCCAGAGGAGAGTGAAGATATTGAGATGAAGTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006855 GO:0008150 GO:0008509 GO:0008514 GO:0008517 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015231 GO:0015238 GO:0015318 GO:0015350 GO:0015711 GO:0015849 GO:0015884 GO:0015885 GO:0015893 GO:0022857 GO:0031967 GO:0031975 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0051958 GO:0055085 GO:0071702 GO:0071705 GO:0072337 GO:0072349 GO:0090482 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

478

Amino Acids

51.69

Weight (kDa)

5.53

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BT1	PF03092	83 - 344	1.3e-82	BT1 family
MFS_1	PF07690	89 - 377	8.6e-14	Major Facilitator Superfamily
BT1	PF03092	344 - 473	4.6e-48	BT1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32040 AT2G32040
fragaria_vesca	FvH4_4g16240 FvH4_4g16240 FvH4_4g16240 FvH4_4g16240
malus_domestica	MD16G1195900.v1.1
prunus_persica	Prupe.1G015900_v2.0.a1 Prupe.1G015900_v2.0.a1
pyrus_communis	pycom13g16740 pycom16g16510
rosa_chinensis	RchiOBHm_Chr4g0415811
rosa_laevigata	RLG00000008038
rosa_multiflora	Rmu_sc0002438.1_g000028
rosa_roxburghii	Rroxscaffold_5G00359660
rosa_rugosa	Rorug04G0136800 Rorug04G0136800
rosa_samantha	Rh4AG198000 Rh4BG196100 Rh4CG209100 Rh4DG195800
rosa_wichuraiana	Rw4G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AccB1I	GGYRCC	1 cut(s)	860
AccB7I	CCANNNNNTGG	2 cut(s)	404, 1364
AccII	CGCG	1 cut(s)	266
AciI	CCGC	2 cut(s)	29, 1376
AclWI	GGATC	2 cut(s)	529, 1389
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	4 cut(s)	188, 796, 980, 1073
AfiI	CCNNNNNNNGG	7 cut(s)	78, 374, 404, 776, 809, 928, 1364
AflIII	ACRYGT	1 cut(s)	991
AgsI	TTSAA	2 cut(s)	248, 614
AjiI	CACGTC	1 cut(s)	992
AluBI	AGCT	9 cut(s)	152, 180, 326, 465, 831, 1000, 1166, 1276, 1341
AluI	AGCT	9 cut(s)	152, 180, 326, 465, 831, 1000, 1166, 1276, 1341
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	3 cut(s)	116, 314, 1287
Alw44I	GTGCAC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	529, 1389
AoxI	GGCC	4 cut(s)	259, 471, 1311, 1366
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	40, 766, 1166
ApoI	RAATTY	4 cut(s)	188, 796, 980, 1073
ArsI	GACNNNNNNTTYG	2 cut(s)	910, 942
AspS9I	GGNCC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	18, 596, 943
AvaII	GGWCC	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	860
BanII	GRGCYC	1 cut(s)	580
BauI	CACGAG	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	3 cut(s)	52, 778, 1153
BccI	CCATC	3 cut(s)	463, 872, 1249
BceAI	ACGGC	2 cut(s)	43, 732
BciVI	GTATCC	1 cut(s)	401
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	3 cut(s)	116, 314, 1287
BfaI	CTAG	2 cut(s)	986, 1170
BfmI	CTRYAG	2 cut(s)	477, 741
BfuI	GTATCC	1 cut(s)	401
BisI	GCNGC	3 cut(s)	41, 767, 1167
BlsI	GCNGC	3 cut(s)	42, 768, 1168
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	420
BmgBI	CACGTC	1 cut(s)	992
BmgT120I	GGNCC	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	862
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	4 cut(s)	673, 880, 1025, 1381
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	5 cut(s)	231, 353, 561, 1243, 1363
Bsc4I	CCNNNNNNNGG	7 cut(s)	78, 374, 404, 776, 809, 928, 1364
Bse1I	ACTGG	1 cut(s)	1063
BseDI	CCNNGG	5 cut(s)	231, 353, 561, 1243, 1363
BseGI	GGATG	4 cut(s)	688, 871, 1041, 1323
BseLI	CCNNNNNNNGG	7 cut(s)	78, 374, 404, 776, 809, 928, 1364
BseMII	CTCAG	5 cut(s)	309, 555, 1023, 1055, 1351
BseNI	ACTGG	1 cut(s)	1063
BseRI	GAGGAG	2 cut(s)	144, 1418
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	3 cut(s)	52, 778, 1153
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	261, 473, 1313, 1368
BshNI	GGYRCC	1 cut(s)	860
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	37, 336
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	7 cut(s)	78, 374, 404, 776, 809, 928, 1364
BsmAI	GTCTC	3 cut(s)	116, 314, 1287
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	4 cut(s)	261, 473, 1313, 1368
Bsp1286I	GDGCHC	2 cut(s)	454, 580
Bsp143I	GATC	2 cut(s)	521, 1381
Bsp19I	CCATGG	3 cut(s)	231, 353, 561
Bsp68I	TCGCGA	1 cut(s)	266
BspACI	CCGC	2 cut(s)	29, 1376
BspANI	GGCC	4 cut(s)	261, 473, 1313, 1368
BspCNI	CTCAG	5 cut(s)	310, 554, 1022, 1054, 1350
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	862
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	2 cut(s)	529, 1389
BspT107I	GGYRCC	1 cut(s)	860
BsrI	ACTGG	1 cut(s)	1063
BssECI	CCNNGG	5 cut(s)	231, 353, 561, 1243, 1363
BssMI	GATC	2 cut(s)	521, 1381
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	5 cut(s)	231, 353, 561, 1243, 1363
Bst2BI	CACGAG	1 cut(s)	579
Bst4CI	ACNGT	5 cut(s)	402, 478, 1126, 1203, 1298
Bst6I	CTCTTC	1 cut(s)	615
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstC8I	GCNNGC	3 cut(s)	273, 915, 1026
BstDEI	CTNAG	5 cut(s)	318, 541, 1009, 1041, 1337
BstDSI	CCRYGG	3 cut(s)	231, 353, 561
BstF5I	GGATG	4 cut(s)	688, 871, 1041, 1323
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	524, 1384
BstMAI	GTCTC	3 cut(s)	116, 314, 1287
BstMBI	GATC	2 cut(s)	521, 1381
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 37, 258, 272, 323, 772
BstNSI	RCATGY	2 cut(s)	133, 601
BstSCI	CCNGG	1 cut(s)	35
BstSFI	CTRYAG	2 cut(s)	477, 741
BstSLI	GKGCMC	1 cut(s)	454
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	52, 778, 1153
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	4 cut(s)	261, 473, 1313, 1368
BtgI	CCRYGG	3 cut(s)	231, 353, 561
BtrI	CACGTC	1 cut(s)	992
BtsCI	GGATG	4 cut(s)	688, 871, 1041, 1323
BtsI	GCAGTG	1 cut(s)	1019
BtsIMutI	CAGTG	5 cut(s)	391, 398, 474, 1019, 1199
BtuMI	TCGCGA	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	273, 915, 1026
Cfr13I	GGNCC	1 cut(s)	420
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
DdeI	CTNAG	5 cut(s)	318, 541, 1009, 1041, 1337
DpnI	GATC	2 cut(s)	523, 1383
DpnII	GATC	2 cut(s)	521, 1381
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco130I	CCWWGG	5 cut(s)	231, 353, 561, 1243, 1363
Eco147I	AGGCCT	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	420
EcoT14I	CCWWGG	5 cut(s)	231, 353, 561, 1243, 1363
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	5 cut(s)	231, 353, 561, 1243, 1363
FaqI	GGGAC	1 cut(s)	380
Fnu4HI	GCNGC	3 cut(s)	41, 767, 1167
FokI	GGATG	4 cut(s)	695, 858, 1048, 1310
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	3 cut(s)	41, 767, 1167
FspBI	CTAG	2 cut(s)	986, 1170
GluI	GCNGC	3 cut(s)	41, 767, 1167
HaeIII	GGCC	4 cut(s)	261, 473, 1313, 1368
HapII	CCGG	2 cut(s)	37, 336
HindIII	AAGCTT	1 cut(s)	998
HinfI	GANTC	8 cut(s)	68, 75, 389, 557, 587, 932, 1039, 1109
HpaII	CCGG	2 cut(s)	37, 336
HphI	GGTGA	3 cut(s)	18, 596, 943
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	5 cut(s)	544, 931, 1071, 1116, 1269
Hpy188III	TCNNGA	3 cut(s)	72, 265, 824
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	408, 547
HpyCH4III	ACNGT	5 cut(s)	402, 478, 1126, 1203, 1298
HpyCH4IV	ACGT	2 cut(s)	893, 991
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 37, 258, 272, 323, 772
HpyF3I	CTNAG	5 cut(s)	318, 541, 1009, 1041, 1337
HpySE526I	ACGT	2 cut(s)	893, 991
Kzo9I	GATC	2 cut(s)	521, 1381
LmnI	GCTCC	2 cut(s)	157, 462
Lsp1109I	GCAGC	3 cut(s)	52, 778, 1153
LweI	GCATC	4 cut(s)	673, 880, 1025, 1381
MaeI	CTAG	2 cut(s)	986, 1170
MaeII	ACGT	2 cut(s)	893, 991
MaeIII	GTNAC	4 cut(s)	588, 1003, 1054, 1285
MalI	GATC	2 cut(s)	523, 1383
MboI	GATC	2 cut(s)	521, 1381
MboII	GAAGA	3 cut(s)	602, 624, 1424
MfeI	CAATTG	1 cut(s)	1101
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	2 cut(s)	454, 580
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	7 cut(s)	188, 796, 846, 980, 1073, 1101, 1432
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	3 cut(s)	596, 941, 1033
MmeI	TCCRAC	1 cut(s)	64
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	363, 1064, 1319
MslI	CAYNNNNRTG	5 cut(s)	17, 352, 457, 876, 1034
Msp20I	TGGCCA	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	2 cut(s)	37, 336
MspR9I	CCNGG	1 cut(s)	37
MunI	CAATTG	1 cut(s)	1101
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	6 cut(s)	28, 37, 258, 272, 323, 772
NciI	CCSGG	1 cut(s)	37
NcoI	CCATGG	3 cut(s)	231, 353, 561
NdeII	GATC	2 cut(s)	521, 1381
NlaIV	GGNNCC	1 cut(s)	862
NmuCI	GTSAC	1 cut(s)	588
NruI	TCGCGA	1 cut(s)	266
NspI	RCATGY	2 cut(s)	133, 601
PceI	AGGCCT	1 cut(s)	261
PfeI	GAWTC	5 cut(s)	68, 75, 389, 557, 1109
PflMI	CCANNNNNTGG	2 cut(s)	404, 1364
PkrI	GCNGC	3 cut(s)	42, 768, 1168
PleI	GAGTC	3 cut(s)	595, 940, 1033
PpsI	GAGTC	3 cut(s)	595, 940, 1033
PpuMI	RGGWCCY	1 cut(s)	420
PsiI	TTATAA	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	862
PspPI	GGNCC	1 cut(s)	420
PspPPI	RGGWCCY	1 cut(s)	420
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	326
RruI	TCGCGA	1 cut(s)	266
RseI	CAYNNNNRTG	5 cut(s)	17, 352, 457, 876, 1034
SaqAI	TTAA	3 cut(s)	363, 1064, 1319
SatI	GCNGC	3 cut(s)	41, 767, 1167
Sau3AI	GATC	2 cut(s)	521, 1381
Sau96I	GGNCC	1 cut(s)	420
SchI	GAGTC	3 cut(s)	596, 941, 1033
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	2 cut(s)	454, 580
SfaNI	GCATC	4 cut(s)	673, 880, 1025, 1381
SfcI	CTRYAG	2 cut(s)	477, 741
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	5 cut(s)	17, 352, 457, 876, 1034
Sse9I	AATT	7 cut(s)	188, 796, 846, 980, 1073, 1101, 1432
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	2 cut(s)	29, 1376
SspMI	CTAG	2 cut(s)	986, 1170
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	35
StyI	CCWWGG	5 cut(s)	231, 353, 561, 1243, 1363
TaaI	ACNGT	5 cut(s)	402, 478, 1126, 1203, 1298
TaiI	ACGT	2 cut(s)	896, 994
TaqI	TCGA	2 cut(s)	66, 825
TasI	AATT	7 cut(s)	188, 796, 846, 980, 1073, 1101, 1432
TfiI	GAWTC	5 cut(s)	68, 75, 389, 557, 1109
Tru1I	TTAA	3 cut(s)	363, 1064, 1319
Tru9I	TTAA	3 cut(s)	363, 1064, 1319
TscAI	CASTG	5 cut(s)	391, 405, 481, 1026, 1206
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	3 cut(s)	40, 766, 1166
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	3 cut(s)	305, 956, 1135
TspRI	CASTG	5 cut(s)	391, 405, 481, 1026, 1206
Van91I	CCANNNNNTGG	2 cut(s)	404, 1364
VneI	GTGCAC	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	420
XapI	RAATTY	4 cut(s)	188, 796, 980, 1073
XceI	RCATGY	2 cut(s)	133, 601
XspI	CTAG	2 cut(s)	986, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.