Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019329

Physical Location & Seq

Genomic Coordinates Reverse (-)

30234887 .. 30238536

Gene Structure 3650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTACTTCGGAGACACAGACACTCGTTTGAATCGGCCAAAGTGCAATGCCGATAGAGCCTATCGGGAAGTGGAAGGTGGCCTTGATTGTTTTAGAGGAGGTGGACGGTCACTTGGTGCTGCAGAAGAGTATCTACTTAATGCTAAGGAGTGGGAACATGCTAGATCATATGTGTTGACCAACACTCCAGCTCCCAAGTTGGAGCAAAGGAAATATGTAGCTACTGCACAAAAGAACAAAGGGCGAAACGTCAGCATGATGCAAGCTGAAAAGAAAGCTCTTGCCGACTTCCCAGAGTGTTTCGATAACTTTGATTCCGGCAGGATACAGGTAAATGGATTACGGCTTCAAGGTGATCCCAGTGCAATTGAAGACCTTGTTACATTGGCAAACGGACCAAGCAAAACTTGCTACAGGTACAAAAAATATCTAAGTAATGGCTTCTGGTTCAAAGTTAGAGGTACTACCCCTCCTGGTAAAACTCAAAATTGGGGTGTGTTCATACAAGCGGAACAGACAAGTTACACTACAACAAACGACCAAAATCCTAAAGATGGTGTCACGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Kinesin Transpos_assoc Transposase_21

Protein Analysis

190

Amino Acids

21.24

Weight (kDa)

8.99

Isoelectric Point (pI)

22.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019329)

Species	Orthologous Gene IDs
pyrus_communis	pycom1755g00050
rosa_laevigata	RLG00000008413
rosa_samantha	Rh1BG099400 Rh1DG118500 Rh3CG254500 Rh4AG142300 Rh4AG301300 Rh4BG139700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	35
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	5, 419, 463
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	4 cut(s)	31, 350, 371, 451
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	4 cut(s)	191, 221, 266, 278
AluI	AGCT	4 cut(s)	191, 221, 266, 278
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	2 cut(s)	35, 79
ApeKI	GCWGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	395
BarI	GAAGNNNNNNTAC	2 cut(s)	117, 149
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	120, 412
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	6 cut(s)	169, 175, 199, 205, 454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMI	GCAATG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	37, 81
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	6
BsnI	GGCC	2 cut(s)	37, 81
Bsp143I	GATC	2 cut(s)	164, 355
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	2 cut(s)	37, 81
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	360
BssMI	GATC	2 cut(s)	164, 355
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	144, 431
BstKTI	GATC	2 cut(s)	167, 358
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	2 cut(s)	164, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 408
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	2 cut(s)	120, 412
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	37, 81
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	4, 418, 462
CviAII	CATG	2 cut(s)	158, 256
CviJI	RGCY	9 cut(s)	37, 59, 81, 191, 221, 266, 278, 346, 441
CviKI_1	RGCY	9 cut(s)	37, 59, 81, 191, 221, 266, 278, 346, 441
CviQI	GTAC	3 cut(s)	4, 418, 462
DdeI	CTNAG	2 cut(s)	144, 431
DpnI	GATC	2 cut(s)	166, 357
DpnII	GATC	2 cut(s)	164, 355
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	472
FaeI	CATG	2 cut(s)	161, 259
FaiI	YATR	6 cut(s)	159, 169, 171, 216, 257, 503
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 391, 423
FatI	CATG	2 cut(s)	157, 255
FauNDI	CATATG	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	37, 81
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	2 cut(s)	161, 259
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	31, 314
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	104, 177
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	104, 177
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	45, 122, 227, 262, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 408
HpyF3I	CTNAG	2 cut(s)	144, 431
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	161, 259
Kzo9I	GATC	2 cut(s)	164, 355
LmnI	GCTCC	2 cut(s)	196, 202
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	4 cut(s)	108, 379, 521, 559
MalI	GATC	2 cut(s)	166, 357
MboI	GATC	2 cut(s)	164, 355
MboII	GAAGA	2 cut(s)	137, 383
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	2 cut(s)	366, 487
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	89, 92, 452, 480
MseI	TTAA	1 cut(s)	138
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	474
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	56, 408
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	2 cut(s)	164, 355
NlaIII	CATG	2 cut(s)	161, 259
NmuCI	GTSAC	2 cut(s)	108, 559
NspI	RCATGY	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	31, 314
PkrI	GCNGC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	124
RsaI	GTAC	3 cut(s)	5, 419, 463
RsaNI	GTAC	3 cut(s)	4, 418, 462
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	164, 355
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	474
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	2 cut(s)	120, 412
SinI	GGWCC	1 cut(s)	395
Sse9I	AATT	2 cut(s)	366, 487
SsiI	CCGC	1 cut(s)	509
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	366, 487
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	31, 314
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	108, 559
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	2 cut(s)	108, 559
TspDTI	ATGAA	1 cut(s)	490
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	395
XceI	RCATGY	1 cut(s)	161
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.