Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0019329

Physical Location & Seq

Genomic Coordinates Reverse (-)

21602604 .. 21619307

Gene Structure 16704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCAATCCCTCCACCTGTGAAACAAAAGCTAGTTTTCTCTGATCAAGAGGAAGACATTGATCACAACCCTTTCCCCTCCATTGAAATCTTGCCAAAAAGAGATGGTGTGAGCAAAGAACCCATGACCCCAACATCTCCATTGGGCGATTTAGTCATTTCTACTGAAAGAAAAGCACCCAAAATACTTTTCCCAAATCCTACTACAGGTGAAGGCTGTCCAGATGTGCCTGGCACACAAAGTCCAGAATCTGTAAATGGATTGAAGCTTCAAGGTGATCCCAATGCAACCGAAGACCTTGTTGCATTGGCAAACGGACCAAGCAAAACTTGCTACAGGTTCAAGAAATATGTAAGTAATGGTTTCCGGTTCAAAGCTAGAGGTACTAACCCTTCTGGTAAAACTCAAAATTGGGGTGTTTTCATACAAGCTGAACAGACAAGTTATGCTACAACAAACGACCAAAATCCCAAGGATGGTATGGTTGATTTTTATGGGGCATTGGTGAATGTATATGAGCTCCACTACAATCCAGACCGTAAGATGCTGAGTGGAAACGGAATGGCTGGCCACTTCGGGAGGGTAGGTATTCTGAAGTCCACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Kinesin Transpos_assoc Transposase_21

Protein Analysis

202

Amino Acids

22.04

Weight (kDa)

6.83

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019329)

Species	Orthologous Gene IDs
pyrus_communis	pycom1755g00050
rosa_laevigata	RLG00000008413
rosa_samantha	Rh1BG099400 Rh1DG118500 Rh3CG254500 Rh4AG142300 Rh4AG301300 Rh4BG139700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	568
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	206, 476
AgsI	TTSAA	5 cut(s)	86, 265, 272, 343, 373
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	31, 268, 377, 431, 520
AluI	AGCT	5 cut(s)	31, 268, 377, 431, 520
Alw21I	GWGCWC	1 cut(s)	522
AlwI	GGATC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	221, 287, 517
AvaII	GGWCC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	522
BarI	GAAGNNNNNNTAC	2 cut(s)	376, 408
BbsI	GAAGAC	2 cut(s)	60, 300
Bbv12I	GWGCWC	1 cut(s)	522
BccI	CCATC	2 cut(s)	98, 470
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	2 cut(s)	43, 61
BfaI	CTAG	2 cut(s)	32, 378
BfmI	CTRYAG	2 cut(s)	204, 334
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	534
BpiI	GAAGAC	2 cut(s)	60, 300
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 476
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	206, 476
BseMII	CTCAG	1 cut(s)	539
BshFI	GGCC	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	206, 476
BsnI	GGCC	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	43, 61, 277
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	1 cut(s)	540
BspPI	GGATC	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	3 cut(s)	43, 61, 277
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	539, 604
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	1 cut(s)	548
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	3 cut(s)	46, 64, 280
BstMBI	GATC	3 cut(s)	43, 61, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	2 cut(s)	204, 334
BstV2I	GAAGAC	2 cut(s)	60, 300
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	568
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	8 cut(s)	31, 216, 268, 377, 431, 520, 566, 570
CviKI_1	RGCY	8 cut(s)	31, 216, 268, 377, 431, 520, 566, 570
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	1 cut(s)	548
DpnI	GATC	3 cut(s)	45, 63, 279
DpnII	GATC	3 cut(s)	43, 61, 277
EaeI	YGGCCR	1 cut(s)	568
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	520
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	1 cut(s)	127
FaiI	YATR	8 cut(s)	125, 351, 425, 447, 482, 495, 514, 516
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FatI	CATG	1 cut(s)	123
FbaI	TGATCA	2 cut(s)	43, 61
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	522
FspBI	CTAG	2 cut(s)	32, 378
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	1 cut(s)	367
Hin1II	CATG	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	3 cut(s)	221, 287, 517
Hpy166II	GTNNAC	1 cut(s)	600
Hpy188I	TCNGA	2 cut(s)	43, 594
Hpy188III	TCNNGA	6 cut(s)	47, 221, 245, 343, 533, 577
Hpy8I	GTNNAC	1 cut(s)	600
HpyAV	CCTTC	2 cut(s)	206, 402
HpyCH4III	ACNGT	2 cut(s)	539, 604
HpyCH4V	TGCA	2 cut(s)	287, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	1 cut(s)	548
Hsp92II	CATG	1 cut(s)	127
Ksp22I	TGATCA	2 cut(s)	43, 61
Kzo9I	GATC	3 cut(s)	43, 61, 277
LmnI	GCTCC	1 cut(s)	525
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	32, 378
MalI	GATC	3 cut(s)	45, 63, 279
MboI	GATC	3 cut(s)	43, 61, 277
MboII	GAAGA	2 cut(s)	65, 305
MhlI	GDGCHC	1 cut(s)	522
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	1 cut(s)	409
MluNI	TGGCCA	1 cut(s)	570
MnlI	CCTC	5 cut(s)	21, 43, 88, 374, 573
Mox20I	TGGCCA	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	570
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	3 cut(s)	43, 61, 277
NlaIII	CATG	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	522
Sau3AI	GATC	3 cut(s)	43, 61, 277
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	2 cut(s)	204, 334
SinI	GGWCC	1 cut(s)	317
Sse9I	AATT	1 cut(s)	409
SspMI	CTAG	2 cut(s)	32, 378
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	539, 604
TasI	AATT	1 cut(s)	409
TfiI	GAWTC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	2 cut(s)	330, 573
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XspI	CTAG	2 cut(s)	32, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.