RLG00000009207

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019302
Physical Location & Seq
Reverse (-)
48815321 .. 48817019
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009207

Sequence Viewer

Length: 771 bp
ATGGCTATAAAATTGACAACAAAGAAAGCCATAAAACACACTAACATTGACGTTAGTACGTTAACGTCAACACTGAATCTCCACATCTGGTTCGTCTCCTCGCATCTCCCTCTCTCTCTTCGCCCATTTTCCTCCTTCCCCTCACCATCTAGTCGTGAACTGAATCGAACAAGATCATGGTGGAAGTCGTCGGAGCTGAAGAAGCTGGTGTCATGGTCATGGTGGAAGTATTGCTCAACGGGAACCAGAACAGGAACTAGATCGAATTTCAAGATGACTACTTTGTTGATGCGTTTTCTCAGGGCTATGTTGTCACGAAATGGAGCAGCTATAGAAATGTCAAAAGATCATAGACCCTGCTGCAAAAAAGAAAGGACGCGAATTGAGTCTTTGGGTGGATATGTTGATGATGGTTATCTGAATAGTCAGTTAGGGGTCACCCGTGCATTAGGTGATTGGCATCTTGAAGGATTGAAGGATGAGGTTGAAAGGGGAGGACCCTTGAGTGCTGAACCGGAACTTAAATTGACAACACTGACCAAGGATGATGAATTTTTTATCATTGGTAGTGATGGAATATGGGATGTGTTCACCAACGAAAATGCTGTAGACTTTGCTCGAAGGAAACTCCAAGAGCACAATGATGTGAAGTTGTGTTGCAAGCAAATAGTAGAGGAGGCAATAAAACGAGGCGCAACCGACAATTTGACACTTGTTATGGTAGAGTTTCCACTTGGAGCCACCTCCACATGTGGTGGTAGAAAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

257

Amino Acids

28.99

Weight (kDa)

9.31

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 101 - 235 2.4e-41 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019302)

Species Orthologous Gene IDs
prunus_persica Prupe.7G255800_v2.0.a1
rosa_laevigata RLG00000009207 RLG00000016426 RLG00000032266 RLG00000033392
rosa_multiflora Rmu_sc0001981.1_g000055
rosa_samantha Rh6AG178800 Rh6AG181000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 609
AccII CGCG 1 cut(s) 379
AcsI RAATTY 2 cut(s) 265, 551
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 749
AgsI TTSAA 4 cut(s) 271, 467, 475, 488
AluBI AGCT 3 cut(s) 196, 205, 329
AluI AGCT 3 cut(s) 196, 205, 329
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 326, 360
ApoI RAATTY 2 cut(s) 265, 551
AspLEI GCGC 1 cut(s) 695
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 4 cut(s) 135, 430, 464, 583
AvaII GGWCC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 639
BbvI GCAGC 2 cut(s) 338, 347
BccI CCATC 3 cut(s) 154, 404, 566
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 3 cut(s) 150, 258, 769
BfmI CTRYAG 2 cut(s) 330, 606
BisI GCNGC 2 cut(s) 327, 361
BlsI GCNGC 2 cut(s) 328, 362
Bme18I GGWCC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 3 cut(s) 244, 499, 739
BmsI GCATC 3 cut(s) 112, 279, 469
BpuEI CTTGAG 1 cut(s) 523
BsaBI GATNNNNATC 2 cut(s) 414, 459
BsaJI CCNNGG 1 cut(s) 540
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bse8I GATNNNNATC 2 cut(s) 414, 459
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 3 cut(s) 484, 550, 589
BseJI GATNNNNATC 2 cut(s) 414, 459
BseMII CTCAG 1 cut(s) 313
BseRI GAGGAG 2 cut(s) 88, 689
BseXI GCAGC 2 cut(s) 338, 347
Bsh1236I CGCG 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 639
BsiSI CCGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 100
BsmBI CGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 639
Bsp143I GATC 3 cut(s) 173, 260, 346
BspCNI CTCAG 1 cut(s) 312
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 244, 499, 739
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 3 cut(s) 173, 260, 346
BssT1I CCWWGG 1 cut(s) 540
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 662
BstDEI CTNAG 1 cut(s) 299
BstEII GGTNACC 1 cut(s) 436
BstF5I GGATG 3 cut(s) 484, 550, 589
BstFNI CGCG 1 cut(s) 379
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 3 cut(s) 176, 263, 349
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 3 cut(s) 173, 260, 346
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 753
BstPI GGTNACC 1 cut(s) 436
BstSFI CTRYAG 2 cut(s) 330, 606
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 338, 347
BtsCI GGATG 3 cut(s) 484, 550, 589
BtsIMutI CAGTG 2 cut(s) 71, 533
Cac8I GCNNGC 1 cut(s) 662
CfoI GCGC 1 cut(s) 695
Cfr13I GGNCC 1 cut(s) 497
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 57
CviAII CATG 4 cut(s) 177, 213, 219, 750
CviJI RGCY 7 cut(s) 5, 29, 196, 205, 305, 329, 740
CviKI_1 RGCY 7 cut(s) 5, 29, 196, 205, 305, 329, 740
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 299
DpnI GATC 3 cut(s) 175, 262, 348
DpnII GATC 3 cut(s) 173, 260, 346
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 497
EcoO65I GGTNACC 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 540
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 4 cut(s) 180, 216, 222, 753
FatI CATG 4 cut(s) 176, 212, 218, 749
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 327, 361
FokI GGATG 3 cut(s) 491, 557, 596
Fsp4HI GCNGC 2 cut(s) 327, 361
FspBI CTAG 3 cut(s) 150, 258, 769
GlaI GCGC 1 cut(s) 694
GluI GCNGC 2 cut(s) 327, 361
HapII CCGG 1 cut(s) 515
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 695
Hin1II CATG 4 cut(s) 180, 216, 222, 753
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HincII GTYRAC 2 cut(s) 63, 69
HindII GTYRAC 2 cut(s) 63, 69
HinfI GANTC 3 cut(s) 76, 163, 386
HpaI GTTAAC 1 cut(s) 63
HpaII CCGG 1 cut(s) 515
HphI GGTGA 4 cut(s) 135, 430, 464, 583
Hpy166II GTNNAC 5 cut(s) 63, 69, 158, 591, 610
Hpy188I TCNGA 2 cut(s) 193, 420
Hpy188III TCNNGA 4 cut(s) 155, 271, 315, 464
Hpy8I GTNNAC 5 cut(s) 63, 69, 158, 591, 610
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 4 cut(s) 145, 461, 469, 615
HpyCH4IV ACGT 3 cut(s) 51, 59, 65
HpyCH4V TGCA 3 cut(s) 363, 446, 660
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 3 cut(s) 51, 59, 65
Hsp92II CATG 4 cut(s) 180, 216, 222, 753
HspAI GCGC 1 cut(s) 693
KspAI GTTAAC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 173, 260, 346
LmnI GCTCC 3 cut(s) 193, 323, 737
LpnPI CCDG 7 cut(s) 73, 191, 237, 259, 286, 370, 528
Lsp1109I GCAGC 2 cut(s) 338, 347
LweI GCATC 3 cut(s) 112, 279, 469
MaeI CTAG 3 cut(s) 150, 258, 769
MaeII ACGT 3 cut(s) 51, 59, 65
MaeIII GTNAC 2 cut(s) 312, 436
MalI GATC 3 cut(s) 175, 262, 348
MboI GATC 3 cut(s) 173, 260, 346
MboII GAAGA 2 cut(s) 110, 211
MhlI GDGCHC 1 cut(s) 639
MluCI AATT 6 cut(s) 11, 265, 381, 524, 551, 703
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 171
MseI TTAA 2 cut(s) 62, 522
MslI CAYNNNNRTG 2 cut(s) 217, 642
MspI CCGG 1 cut(s) 515
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 3 cut(s) 173, 260, 346
NlaIII CATG 4 cut(s) 180, 216, 222, 753
NlaIV GGNNCC 3 cut(s) 244, 499, 739
NmuCI GTSAC 2 cut(s) 312, 436
NspI RCATGY 1 cut(s) 753
PciI ACATGT 1 cut(s) 749
PfeI GAWTC 2 cut(s) 76, 163
PkrI GCNGC 2 cut(s) 328, 362
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 497
PscI ACATGT 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 497
PspEI GGTNACC 1 cut(s) 436
PspN4I GGNNCC 3 cut(s) 244, 499, 739
PspPI GGNCC 1 cut(s) 497
PspPPI RGGWCCY 1 cut(s) 497
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 2 cut(s) 217, 642
SaqAI TTAA 2 cut(s) 62, 522
SatI GCNGC 2 cut(s) 327, 361
Sau3AI GATC 3 cut(s) 173, 260, 346
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 639
SfaNI GCATC 3 cut(s) 112, 279, 469
SfcI CTRYAG 2 cut(s) 330, 606
SinI GGWCC 1 cut(s) 497
SmiMI CAYNNNNRTG 2 cut(s) 217, 642
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
Sse9I AATT 6 cut(s) 11, 265, 381, 524, 551, 703
SspMI CTAG 3 cut(s) 150, 258, 769
StyI CCWWGG 1 cut(s) 540
TaiI ACGT 3 cut(s) 54, 62, 68
TaqI TCGA 3 cut(s) 166, 263, 619
TasI AATT 6 cut(s) 11, 265, 381, 524, 551, 703
TfiI GAWTC 2 cut(s) 76, 163
Tru1I TTAA 2 cut(s) 62, 522
Tru9I TTAA 2 cut(s) 62, 522
TscAI CASTG 2 cut(s) 78, 540
TseFI GTSAC 2 cut(s) 312, 436
TseI GCWGC 2 cut(s) 326, 360
Tsp45I GTSAC 2 cut(s) 312, 436
TspDTI ATGAA 1 cut(s) 564
TspRI CASTG 2 cut(s) 78, 540
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 2 cut(s) 265, 551
XceI RCATGY 1 cut(s) 753
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 3 cut(s) 150, 258, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.