Rh6AG178800

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019302
Physical Location & Seq
Forward (+)
30873904 .. 30874338
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG178800.1

Sequence Viewer

Length: 435 bp
ATGTCAAAAGATCATAGACCCTGCTGCAAAAAAGAAAGGACGCGAATTGAGTCTTTGGGTGGATATGTTGATGATGGTTATCTGAATGGTCAGTTAGGGGTCACCCGTGCATTAGGTGATTGGCATCTTGAAGGATTGAAGGATGAGGGTGAAAGGGGAGGACCCTTGAGTGCTGAACCGGAACTTAAATTGACAACACTGACCAAGGATGATGAATTTTTTATCATTGGTAGTGATGGAATATGGGATGTGTTCACCAACGAAAATGCTGTAGACTTTGCTCGAAGGAAACTCCAAGAGCACAATGATGTGAAGCTGTGTTGCAAGCACATAGTAGAGGAGGTAATAAAACGAGGCGCAACCGACAATTTGACACTTGTTATGGTAGAGTTTCCACTTGGAGCCACCTCCACATGTGGTGGTAGAAAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

144

Amino Acids

16.02

Weight (kDa)

5.4

Isoelectric Point (pI)

27.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 1 - 123 3.9e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019302)

Species Orthologous Gene IDs
prunus_persica Prupe.7G255800_v2.0.a1
rosa_laevigata RLG00000009207 RLG00000016426 RLG00000032266 RLG00000033392
rosa_multiflora Rmu_sc0001981.1_g000055
rosa_samantha Rh6AG178800 Rh6AG181000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 273
AccII CGCG 1 cut(s) 43
AcsI RAATTY 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 2 cut(s) 131, 139
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw21I GWGCWC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 94, 128, 161, 247
AvaII GGWCC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 11
BccI CCATC 2 cut(s) 68, 230
BfaI CTAG 1 cut(s) 433
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 163, 403
BmsI GCATC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 187
BsaBI GATNNNNATC 2 cut(s) 78, 123
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 178
Bse8I GATNNNNATC 2 cut(s) 78, 123
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 3 cut(s) 148, 214, 253
BseJI GATNNNNATC 2 cut(s) 78, 123
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 10
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 163, 403
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 326
BstEII GGTNACC 1 cut(s) 100
BstF5I GGATG 3 cut(s) 148, 214, 253
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 417
BstPI GGTNACC 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 11
BtsCI GGATG 3 cut(s) 148, 214, 253
BtsIMutI CAGTG 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 326
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 49
CviAII CATG 1 cut(s) 414
CviJI RGCY 2 cut(s) 316, 404
CviKI_1 RGCY 2 cut(s) 316, 404
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 161
Eco91I GGTNACC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 417
FaiI YATR 6 cut(s) 15, 66, 244, 332, 383, 415
FatI CATG 1 cut(s) 413
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 3 cut(s) 155, 221, 260
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 1 cut(s) 433
GlaI GCGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 25
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 49
HhaI GCGC 1 cut(s) 359
Hin1II CATG 1 cut(s) 417
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 179
HphI GGTGA 4 cut(s) 94, 128, 161, 247
Hpy166II GTNNAC 2 cut(s) 255, 274
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 255, 274
HpyAV CCTTC 3 cut(s) 125, 133, 279
HpyCH4V TGCA 3 cut(s) 27, 110, 324
Hsp92II CATG 1 cut(s) 417
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 2 cut(s) 34, 192
Lsp1109I GCAGC 1 cut(s) 11
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 4 cut(s) 45, 188, 215, 367
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 6 cut(s) 139, 152, 331, 334, 347, 418
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 43
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 2 cut(s) 163, 403
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 1 cut(s) 417
PciI ACATGT 1 cut(s) 413
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 161
PscI ACATGT 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 161
PspEI GGTNACC 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 163, 403
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 303
SetI ASST 5 cut(s) 118, 318, 345, 410, 432
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 4 cut(s) 45, 188, 215, 367
SspMI CTAG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 204
TaqI TCGA 1 cut(s) 283
TasI AATT 4 cut(s) 45, 188, 215, 367
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.