Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012553

Physical Location & Seq

Genomic Coordinates Reverse (-)

21442199 .. 21445867

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G255800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTGCTTGATAGACGCAGAACAGCTTGGTCAAGAAATGGGGAATATGGAGAATAATAACATCAATACCAACAACAATAACAAGCACTGGCCTTTGCAATGTGAAATCTTGCACAACCAGACGGACAATTTGGACAAGGAAACTCCTTTCATCAGCTCCAGTCTTCAGAAAACCATGTTAAACTCATTTCAACTCGAAAGCATATGTGAGGATACAGTGGTTGTAGACAGAAAACAGAGCCTGCTGAACTTGTTCCCTTCCCTTCGGTCAGGAGAGTGGTCTGACATTGGGGGTCGAACCCATATGGAGGATACTCATATATGCATTGGTGACTTAGCTAAAAAGTTTGATTATAATGTACTCAGTGAGGGAGCTATCTCCTTCTATGGTGTATTTGATGGCCATGGAGGAAAGGATGCAGCACAATTTGTTCGTGACAATTTGCCAAGAGTAGTTGTTGAGGATGCTGACTTTCCATTAGAACTTGAAAAGGTGATAACAAGGTCATTTATGGAGACAGACGCTGCATTTGCAAAAACGTGCTCCCTTGAGTCTTCCCATGCATCTGGAACAACTGCACTCACTGCAATGATATTTGGGAGGTCTTTGCTTGTGGCAAATGCTGGAGATTGCCGGGCTGTATTGTCACGATGTGGAGCGGCTGTAGAAATGTCAAAAGATCATAGGCCCTGCTGCACAAAAGAAAGAATGCGGATTGAATCCTTGGGTGGATATATTGATGATGGTTATCTAAATGGTCAGTTAGGTGTCACCCGTGCATTAGGTGATTGGCATCTTGAAGGAATGAAGGGTGGGGGTGAAAGGGGAGGACCCTTAAGTGCTGAACCAGAACTCAAATTAATGACACTGACCAAGGATGATGAGTTTTTGATCATTGGTAGTGACGGAATATGGGAGATGTTCACCAGCCAAAATGCTGTTGATTTTGCTCGAAGGAGACTCCAAGAGCACAATGATGTGAAGTTGTGCTGCAAGGAAATAGTAGAGGAGGCAATAAAGCGTGGAGCAAGCGATAATTTGACACTGGTTATGGTGAGTTTCCACTTGGAGCCTCCTCCACATGTGGTGGTAGAGAGGTCTAGAGTCAGACGAAGCATTTCTGCTGAAGGACTTCAGAATCTCAAATTCTTCTTAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

388

Amino Acids

43.05

Weight (kDa)

5.06

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01790 FvH4_1g01790
malus_domestica	MD02G1014300.v1.1 MD15G1160600.v1.1
prunus_persica	Prupe.7G255800_v2.0.a1 Prupe.7G255800_v2.0.a1
pyrus_communis	pycom02g01310 pycom15g14450 pycom15g27150
rosa_chinensis	RchiOBHm_Chr2g0086781
rosa_laevigata	RLG00000015791
rosa_multiflora	Rmu_sc0005498.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154200
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021800 Rh2BG021600 Rh2CG022400 Rh2DG022400
rosa_wichuraiana	Rw2G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccBSI	CCGCTC	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	2 cut(s)	659, 712
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	1145
AcuI	CTGAAG	3 cut(s)	149, 1118, 1146
AdeI	CACNNNGTG	1 cut(s)	653
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflII	CTTAAG	1 cut(s)	835
AflIII	ACRYGT	1 cut(s)	1081
AgsI	TTSAA	4 cut(s)	191, 488, 719, 800
AluBI	AGCT	4 cut(s)	25, 156, 338, 374
AluI	AGCT	4 cut(s)	25, 156, 338, 374
Alw21I	GWGCWC	2 cut(s)	545, 972
Alw26I	GTCTC	2 cut(s)	509, 952
AlwNI	CAGNNNCTG	2 cut(s)	241, 524
AoxI	GGCC	3 cut(s)	89, 400, 686
ApeKI	GCWGC	4 cut(s)	419, 524, 693, 990
ApoI	RAATTY	1 cut(s)	1145
ArsI	GACNNNNNNTTYG	4 cut(s)	112, 144, 512, 544
AseI	ATTAAT	1 cut(s)	860
Asp700I	GAANNNNTTC	3 cut(s)	251, 1117, 1131
AspS9I	GGNCC	2 cut(s)	687, 830
AsuC2I	CCSGG	1 cut(s)	635
AsuHPI	GGTGA	7 cut(s)	341, 505, 763, 797, 830, 916, 1066
AvaII	GGWCC	1 cut(s)	830
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BalI	TGGCCA	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	155, 546
Bbv12I	GWGCWC	2 cut(s)	545, 972
BbvI	GCAGC	4 cut(s)	431, 511, 680, 977
BccI	CCATC	2 cut(s)	392, 737
BciVI	GTATCC	2 cut(s)	205, 304
BclI	TGATCA	1 cut(s)	891
BcnI	CCSGG	1 cut(s)	635
BcoDI	GTCTC	2 cut(s)	509, 952
BfaI	CTAG	1 cut(s)	1101
BfmI	CTRYAG	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	835
BfuI	GTATCC	2 cut(s)	205, 304
BisI	GCNGC	5 cut(s)	420, 525, 660, 694, 991
BlsI	GCNGC	5 cut(s)	421, 526, 661, 695, 992
Bme1390I	CCNGG	1 cut(s)	635
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	2 cut(s)	687, 830
BmiI	GGNNCC	2 cut(s)	832, 1071
BmrFI	CCNGG	1 cut(s)	635
BmsI	GCATC	4 cut(s)	406, 454, 572, 802
BpiI	GAAGAC	2 cut(s)	155, 546
BpmI	CTGGAG	2 cut(s)	142, 645
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	635
BsaBI	GATNNNNATC	2 cut(s)	747, 792
BsaJI	CCNNGG	3 cut(s)	403, 723, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	3 cut(s)	92, 159, 1050
Bse3DI	GCAATG	2 cut(s)	104, 594
Bse8I	GATNNNNATC	2 cut(s)	747, 792
BseDI	CCNNGG	3 cut(s)	403, 723, 873
BseGI	GGATG	3 cut(s)	421, 469, 883
BseJI	GATNNNNATC	2 cut(s)	747, 792
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	2 cut(s)	104, 594
BseMII	CTCAG	1 cut(s)	376
BseNI	ACTGG	3 cut(s)	92, 159, 1050
BseRI	GAGGAG	2 cut(s)	1022, 1065
BseXI	GCAGC	4 cut(s)	431, 511, 680, 977
BsgI	GTGCAG	2 cut(s)	561, 679
BshFI	GGCC	3 cut(s)	91, 402, 688
BsiHKAI	GWGCWC	2 cut(s)	545, 972
BsiSI	CCGG	1 cut(s)	634
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	2 cut(s)	509, 952
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	3 cut(s)	91, 402, 688
Bsp1286I	GDGCHC	2 cut(s)	545, 972
Bsp143I	GATC	2 cut(s)	679, 891
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	2 cut(s)	659, 712
BspANI	GGCC	3 cut(s)	91, 402, 688
BspCNI	CTCAG	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	832, 1071
BspTI	CTTAAG	1 cut(s)	835
BsrBI	CCGCTC	1 cut(s)	659
BsrDI	GCAATG	2 cut(s)	104, 594
BsrI	ACTGG	3 cut(s)	92, 159, 1050
BssECI	CCNNGG	3 cut(s)	403, 723, 873
BssMI	GATC	2 cut(s)	679, 891
BssT1I	CCWWGG	3 cut(s)	403, 723, 873
Bst4CI	ACNGT	1 cut(s)	217
BstAFI	CTTAAG	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	242, 1030
BstDEI	CTNAG	3 cut(s)	334, 362, 1153
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	3 cut(s)	421, 469, 883
BstKTI	GATC	2 cut(s)	682, 894
BstMAI	GTCTC	2 cut(s)	509, 952
BstMBI	GATC	2 cut(s)	679, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 584
BstNSI	RCATGY	1 cut(s)	1085
BstSCI	CCNGG	1 cut(s)	633
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	4 cut(s)	431, 511, 680, 977
BstV2I	GAAGAC	2 cut(s)	155, 546
BstXI	CCANNNNNNTGG	1 cut(s)	566
BsuI	GTATCC	2 cut(s)	205, 304
BsuRI	GGCC	3 cut(s)	91, 402, 688
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	421, 469, 883
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	6 cut(s)	85, 222, 370, 582, 866, 1043
Cac8I	GCNNGC	2 cut(s)	242, 1030
CaiI	CAGNNNCTG	2 cut(s)	241, 524
Cfr13I	GGNCC	2 cut(s)	687, 830
CseI	GACGC	2 cut(s)	23, 530
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	4 cut(s)	175, 404, 560, 1082
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	3 cut(s)	334, 362, 1153
DpnI	GATC	2 cut(s)	681, 893
DpnII	GATC	2 cut(s)	679, 891
DraIII	CACNNNGTG	1 cut(s)	653
EaeI	YGGCCR	1 cut(s)	400
Eco130I	CCWWGG	3 cut(s)	403, 723, 873
Eco47I	GGWCC	1 cut(s)	830
Eco57I	CTGAAG	3 cut(s)	149, 1118, 1146
EcoO109I	RGGNCCY	2 cut(s)	687, 830
EcoT14I	CCWWGG	3 cut(s)	403, 723, 873
EcoT22I	ATGCAT	2 cut(s)	326, 565
ErhI	CCWWGG	3 cut(s)	403, 723, 873
FaeI	CATG	4 cut(s)	178, 407, 563, 1085
FatI	CATG	4 cut(s)	174, 403, 559, 1081
FauNDI	CATATG	2 cut(s)	203, 303
FbaI	TGATCA	1 cut(s)	891
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	420, 525, 660, 694, 991
FokI	GGATG	3 cut(s)	428, 476, 890
Fsp4HI	GCNGC	5 cut(s)	420, 525, 660, 694, 991
FspBI	CTAG	1 cut(s)	1101
GluI	GCNGC	5 cut(s)	420, 525, 660, 694, 991
GsuI	CTGGAG	2 cut(s)	142, 645
HaeIII	GGCC	3 cut(s)	91, 402, 688
HapII	CCGG	1 cut(s)	634
HgaI	GACGC	2 cut(s)	23, 530
Hin1II	CATG	4 cut(s)	178, 407, 563, 1085
HinfI	GANTC	5 cut(s)	551, 719, 960, 1104, 1138
HpaII	CCGG	1 cut(s)	634
HphI	GGTGA	7 cut(s)	341, 505, 763, 797, 830, 916, 1066
Hpy166II	GTNNAC	2 cut(s)	226, 924
Hpy188I	TCNGA	4 cut(s)	168, 283, 1109, 1137
Hpy188III	TCNNGA	7 cut(s)	32, 270, 434, 567, 648, 797, 1101
Hpy8I	GTNNAC	2 cut(s)	226, 924
HpyAV	CCTTC	7 cut(s)	267, 272, 391, 794, 802, 948, 1121
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 584
HpyF3I	CTNAG	3 cut(s)	334, 362, 1153
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	4 cut(s)	178, 407, 563, 1085
Ksp22I	TGATCA	1 cut(s)	891
Kzo9I	GATC	2 cut(s)	679, 891
LmnI	GCTCC	6 cut(s)	161, 371, 548, 656, 1025, 1069
Lsp1109I	GCAGC	4 cut(s)	431, 511, 680, 977
LweI	GCATC	4 cut(s)	406, 454, 572, 802
MaeI	CTAG	1 cut(s)	1101
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	5 cut(s)	329, 434, 645, 769, 902
MalI	GATC	2 cut(s)	681, 893
MbiI	CCGCTC	1 cut(s)	659
MboI	GATC	2 cut(s)	679, 891
MboII	GAAGA	3 cut(s)	155, 546, 1141
MhlI	GDGCHC	2 cut(s)	545, 972
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	6 cut(s)	127, 425, 439, 857, 1036, 1145
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	3 cut(s)	560, 954, 1113
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	2 cut(s)	326, 565
MroXI	GAANNNNTTC	3 cut(s)	251, 1117, 1131
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	3 cut(s)	179, 836, 860
MslI	CAYNNNNRTG	2 cut(s)	587, 975
Msp20I	TGGCCA	1 cut(s)	402
MspCI	CTTAAG	1 cut(s)	835
MspI	CCGG	1 cut(s)	634
MspR9I	CCNGG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	530, 584
NciI	CCSGG	1 cut(s)	635
NcoI	CCATGG	1 cut(s)	403
NdeI	CATATG	2 cut(s)	203, 303
NdeII	GATC	2 cut(s)	679, 891
NlaIII	CATG	4 cut(s)	178, 407, 563, 1085
NlaIV	GGNNCC	2 cut(s)	832, 1071
NmuCI	GTSAC	5 cut(s)	329, 434, 645, 769, 902
NsiI	ATGCAT	2 cut(s)	326, 565
NspI	RCATGY	1 cut(s)	1085
PciI	ACATGT	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	3 cut(s)	251, 1117, 1131
PfeI	GAWTC	2 cut(s)	719, 1138
PkrI	GCNGC	5 cut(s)	421, 526, 661, 695, 992
PleI	GAGTC	3 cut(s)	559, 954, 1112
PpsI	GAGTC	3 cut(s)	559, 954, 1112
PpuMI	RGGWCCY	1 cut(s)	830
PscI	ACATGT	1 cut(s)	1081
PshBI	ATTAAT	1 cut(s)	860
PsiI	TTATAA	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	830
PspN4I	GGNNCC	2 cut(s)	832, 1071
PspPI	GGNCC	2 cut(s)	687, 830
PspPPI	RGGWCCY	1 cut(s)	830
PstNI	CAGNNNCTG	2 cut(s)	241, 524
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	2 cut(s)	587, 975
SaqAI	TTAA	3 cut(s)	179, 836, 860
SatI	GCNGC	5 cut(s)	420, 525, 660, 694, 991
Sau3AI	GATC	2 cut(s)	679, 891
Sau96I	GGNCC	2 cut(s)	687, 830
SchI	GAGTC	3 cut(s)	560, 954, 1113
ScrFI	CCNGG	1 cut(s)	635
SduI	GDGCHC	2 cut(s)	545, 972
SfaNI	GCATC	4 cut(s)	406, 454, 572, 802
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	1 cut(s)	830
SmiMI	CAYNNNNRTG	2 cut(s)	587, 975
SmlI	CTYRAG	2 cut(s)	548, 835
SmoI	CTYRAG	2 cut(s)	548, 835
Sse9I	AATT	6 cut(s)	127, 425, 439, 857, 1036, 1145
SsiI	CCGC	2 cut(s)	659, 712
SspMI	CTAG	1 cut(s)	1101
StyD4I	CCNGG	1 cut(s)	633
StyI	CCWWGG	3 cut(s)	403, 723, 873
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	3 cut(s)	195, 295, 952
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	6 cut(s)	127, 425, 439, 857, 1036, 1145
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	2 cut(s)	719, 1138
Tru1I	TTAA	3 cut(s)	179, 836, 860
Tru9I	TTAA	3 cut(s)	179, 836, 860
TscAI	CASTG	6 cut(s)	92, 222, 370, 589, 873, 1050
TseFI	GTSAC	5 cut(s)	329, 434, 645, 769, 902
TseI	GCWGC	4 cut(s)	419, 524, 693, 990
Tsp45I	GTSAC	5 cut(s)	329, 434, 645, 769, 902
TspDTI	ATGAA	2 cut(s)	139, 821
TspGWI	ACGGA	2 cut(s)	137, 921
TspRI	CASTG	6 cut(s)	92, 222, 370, 589, 873, 1050
Vha464I	CTTAAG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	830
VspI	ATTAAT	1 cut(s)	860
XapI	RAATTY	1 cut(s)	1145
XbaI	TCTAGA	1 cut(s)	1100
XceI	RCATGY	1 cut(s)	1085
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	3 cut(s)	251, 1117, 1131
XspI	CTAG	1 cut(s)	1101
Zsp2I	ATGCAT	2 cut(s)	326, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.