Rroxscaffold_2G00154200

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012553
Physical Location & Seq
Forward (+)
90880899 .. 90883721
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154200.1

Sequence Viewer

Length: 1149 bp
ATGTGTTTGAATGATGCAGAAATGGGAAACATGGAGAACAATAACATCAATACCAACAACAACAACGACAACAGCAAGCAGCAGTCTTTGCATTGTGAAAACGAGAAGGATAATTTGGACAGGGAATCTCCGGTGATGAGCTCCGATCAACAAAGCACCGTGTTGAATTCGTTTCAGCTTGAAAGCATATCCGAGGATTCAGTAGTTGTAGACCGAAAACAGAACATGTCACATTTTGTCCCTGCCCTTCGATCAGGAGAGTGGTCTGATATAGGAGATCGTCCCCATATGGAAGATACTCATATATGCATCAGTGACTTGGCTAAGAAGTTTGGTTATAATGTACTCAATGATGAAGCTATCTCCTTCTATGGTGTATTTGATGGTCATGGGGGAAAGGATGCAGCGCAATTTGTTCGTGACAACCTGCCAAGAGTCATCGTTGAGGATGCTGACTTCCCTGTAGAGCTTGAAAAGGTGATAACAAGGTCATTTGTTGAGACGGATGCTGCATTTGCAAAAACTTGCTCACTTCAGTCTTCCCTTGCTTCTGGCACAACTGCACTCACTGCAATGATATTTGGGAGGTCTTTGCTCGTGGCAAATGCTGGAGATTGCAGGGCTATATTGTCGCGAAATGGAGCAGCTATAGAAATGTCAAAAGATCATAGACCCTGCTGCACAAAAGAAAGGATGCGAATTGAGTCTTTGGGTGGATATGTTGATGATGGTTATCTGAATGGTCAGTTAGGGGTCACCCGTGCATTAGGTGATTGGCATCTTGAAGGATTGAAGGATGAGGGTGAAAGGGGAGGACCCTTGAGTGCTGAACCGGAACTTAAATTGACAACACTGACCAAAGATGATGAATTTTTTATCATTGGTAGTGATGGAATATGGGATGTGTTCACCAACCAAAATGCTGTAGACTTTGCTCGAAGGAAACTCCAAGAGCGCAATGATGTGAAGCTGTGTTGCAAGCAAATAGTAGAGGAGGCAATAAAACGAGGCGCAACCGACAATTTGACACTTGTTATGGTGAGTTTCCACTTGGAGCCACCTCCACATCTGGTGGTAGAAAGGTCTAGAGTCAGACGTAGTATTTCTGCTGAGGGACTACAAAATCTTCAGTTCTTCTTAGATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

382

Amino Acids

42.56

Weight (kDa)

4.9

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 95 - 341 8.8e-68 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 435
AccI GTMKAC 2 cut(s) 210, 927
AccII CGCG 1 cut(s) 634
AcsI RAATTY 2 cut(s) 166, 869
AcuI CTGAAG 2 cut(s) 518, 1112
AfaI GTAC 1 cut(s) 345
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 6 cut(s) 10, 166, 182, 473, 785, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 6 cut(s) 141, 178, 359, 469, 647, 970
AluI AGCT 6 cut(s) 141, 178, 359, 469, 647, 970
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 494
ApeKI GCWGC 5 cut(s) 79, 404, 509, 644, 678
ApoI RAATTY 2 cut(s) 166, 869
AspLEI GCGC 3 cut(s) 409, 957, 1013
AspS9I GGNCC 1 cut(s) 815
AsuHPI GGTGA 7 cut(s) 145, 490, 748, 782, 815, 901, 1051
AvaII GGWCC 1 cut(s) 815
BanII GRGCYC 1 cut(s) 143
BauI CACGAG 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 1110
BbvI GCAGC 5 cut(s) 91, 416, 496, 656, 665
BccI CCATC 3 cut(s) 377, 722, 884
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 1 cut(s) 1086
BfmI CTRYAG 3 cut(s) 462, 648, 924
BfuAI ACCTGC 1 cut(s) 435
BisI GCNGC 5 cut(s) 80, 405, 510, 645, 679
BlsI GCNGC 5 cut(s) 81, 406, 511, 646, 680
Bme18I GGWCC 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 815
BmiI GGNNCC 2 cut(s) 817, 1056
BmsI GCATC 7 cut(s) 4, 318, 391, 439, 496, 684, 787
BpiI GAAGAC 1 cut(s) 531
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 1 cut(s) 1110
BpuEI CTTGAG 1 cut(s) 841
Bsa29I ATCGAT 1 cut(s) 1144
BsaBI GATNNNNATC 2 cut(s) 732, 777
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 2 cut(s) 130, 832
Bse3DI GCAATG 2 cut(s) 579, 964
Bse8I GATNNNNATC 2 cut(s) 732, 777
BseCI ATCGAT 1 cut(s) 1144
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 6 cut(s) 406, 454, 511, 699, 802, 907
BseJI GATNNNNATC 2 cut(s) 732, 777
BseMI GCAATG 2 cut(s) 579, 964
BseMII CTCAG 1 cut(s) 1101
BseRI GAGGAG 1 cut(s) 1007
BseXI GCAGC 5 cut(s) 91, 416, 496, 656, 665
BsgI GTGCAG 2 cut(s) 546, 664
Bsh1236I CGCG 1 cut(s) 634
BshVI ATCGAT 1 cut(s) 1144
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 131, 833
BslFI GGGAC 3 cut(s) 224, 267, 1128
BsmAI GTCTC 1 cut(s) 494
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 3 cut(s) 224, 267, 1128
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 5 cut(s) 145, 251, 277, 664, 1141
Bsp68I TCGCGA 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 1102
BspDI ATCGAT 1 cut(s) 1144
BspFNI CGCG 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 817, 1056
BspMI ACCTGC 1 cut(s) 435
BsrDI GCAATG 2 cut(s) 579, 964
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 5 cut(s) 145, 251, 277, 664, 1141
BssSI CACGAG 1 cut(s) 596
Bst2BI CACGAG 1 cut(s) 596
Bst4CI ACNGT 1 cut(s) 160
BstAPI GCANNNNNTGC 2 cut(s) 88, 569
BstC8I GCNNGC 2 cut(s) 77, 980
BstDEI CTNAG 3 cut(s) 324, 1110, 1138
BstEII GGTNACC 1 cut(s) 754
BstF5I GGATG 6 cut(s) 406, 454, 511, 699, 802, 907
BstFNI CGCG 1 cut(s) 634
BstHHI GCGC 3 cut(s) 409, 957, 1013
BstKTI GATC 5 cut(s) 148, 254, 280, 667, 1144
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 5 cut(s) 145, 251, 277, 664, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 88, 515, 569
BstNSI RCATGY 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 754
BstSFI CTRYAG 3 cut(s) 462, 648, 924
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 5 cut(s) 91, 416, 496, 656, 665
BstV2I GAAGAC 1 cut(s) 531
Bsu15I ATCGAT 1 cut(s) 1144
BsuTUI ATCGAT 1 cut(s) 1144
BtsCI GGATG 6 cut(s) 406, 454, 511, 699, 802, 907
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 3 cut(s) 319, 567, 851
BtuMI TCGCGA 1 cut(s) 634
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 77, 980
CfoI GCGC 3 cut(s) 409, 957, 1013
Cfr13I GGNCC 1 cut(s) 815
ClaI ATCGAT 1 cut(s) 1144
Csp6I GTAC 1 cut(s) 344
CviAII CATG 3 cut(s) 31, 226, 389
CviJI RGCY 9 cut(s) 141, 178, 323, 359, 469, 623, 647, 970, 1057
CviKI_1 RGCY 9 cut(s) 141, 178, 323, 359, 469, 623, 647, 970, 1057
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 3 cut(s) 324, 1110, 1138
DpnI GATC 5 cut(s) 147, 253, 279, 666, 1143
DpnII GATC 5 cut(s) 145, 251, 277, 664, 1141
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 815
Eco53kI GAGCTC 1 cut(s) 141
Eco57I CTGAAG 2 cut(s) 518, 1112
Eco91I GGTNACC 1 cut(s) 754
EcoICRI GAGCTC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 815
EcoO65I GGTNACC 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 3 cut(s) 34, 229, 392
FaqI GGGAC 3 cut(s) 224, 267, 1128
FatI CATG 3 cut(s) 30, 225, 388
FauNDI CATATG 1 cut(s) 288
FblI GTMKAC 2 cut(s) 210, 927
Fnu4HI GCNGC 5 cut(s) 80, 405, 510, 645, 679
FokI GGATG 6 cut(s) 413, 461, 518, 706, 809, 914
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 5 cut(s) 80, 405, 510, 645, 679
FspBI CTAG 1 cut(s) 1086
GlaI GCGC 3 cut(s) 408, 956, 1012
GluI GCNGC 5 cut(s) 80, 405, 510, 645, 679
GsuI CTGGAG 1 cut(s) 630
HapII CCGG 2 cut(s) 131, 833
HhaI GCGC 3 cut(s) 409, 957, 1013
Hin1II CATG 3 cut(s) 34, 229, 392
Hin6I GCGC 3 cut(s) 407, 955, 1011
HinP1I GCGC 3 cut(s) 407, 955, 1011
HinfI GANTC 5 cut(s) 125, 197, 435, 704, 1089
HpaII CCGG 2 cut(s) 131, 833
HphI GGTGA 7 cut(s) 145, 490, 748, 782, 815, 901, 1051
Hpy166II GTNNAC 3 cut(s) 211, 909, 928
Hpy188I TCNGA 5 cut(s) 145, 193, 268, 738, 1094
Hpy188III TCNNGA 5 cut(s) 255, 419, 633, 782, 1086
Hpy8I GTNNAC 3 cut(s) 211, 909, 928
HpyAV CCTTC 6 cut(s) 100, 257, 376, 779, 787, 933
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 1096
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 515, 569
HpyF3I CTNAG 3 cut(s) 324, 1110, 1138
HpySE526I ACGT 1 cut(s) 1096
Hsp92II CATG 3 cut(s) 34, 229, 392
HspAI GCGC 3 cut(s) 407, 955, 1011
Kzo9I GATC 5 cut(s) 145, 251, 277, 664, 1141
LmnI GCTCC 3 cut(s) 146, 641, 1054
Lsp1109I GCAGC 5 cut(s) 91, 416, 496, 656, 665
LweI GCATC 7 cut(s) 4, 318, 391, 439, 496, 684, 787
MaeI CTAG 1 cut(s) 1086
MaeII ACGT 1 cut(s) 1096
MaeIII GTNAC 4 cut(s) 228, 314, 419, 754
MalI GATC 5 cut(s) 147, 253, 279, 666, 1143
MboI GATC 5 cut(s) 145, 251, 277, 664, 1141
MboII GAAGA 4 cut(s) 305, 531, 1118, 1126
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 7 cut(s) 112, 166, 410, 699, 842, 869, 1021
MlyI GAGTC 3 cut(s) 444, 713, 1098
Mph1103I ATGCAT 1 cut(s) 311
MseI TTAA 1 cut(s) 840
MslI CAYNNNNRTG 1 cut(s) 572
MspI CCGG 2 cut(s) 131, 833
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 3 cut(s) 88, 515, 569
NdeI CATATG 1 cut(s) 288
NdeII GATC 5 cut(s) 145, 251, 277, 664, 1141
NlaIII CATG 3 cut(s) 34, 229, 392
NlaIV GGNNCC 2 cut(s) 817, 1056
NmuCI GTSAC 4 cut(s) 228, 314, 419, 754
NruI TCGCGA 1 cut(s) 634
NsiI ATGCAT 1 cut(s) 311
NspI RCATGY 1 cut(s) 229
PciI ACATGT 1 cut(s) 225
PfeI GAWTC 2 cut(s) 125, 197
PkrI GCNGC 5 cut(s) 81, 406, 511, 646, 680
PleI GAGTC 3 cut(s) 443, 712, 1097
PpsI GAGTC 3 cut(s) 443, 712, 1097
PpuMI RGGWCCY 1 cut(s) 815
PscI ACATGT 1 cut(s) 225
PsiI TTATAA 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 815
PspEI GGTNACC 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 817, 1056
PspPI GGNCC 1 cut(s) 815
PspPPI RGGWCCY 1 cut(s) 815
RruI TCGCGA 1 cut(s) 634
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 572
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 840
SatI GCNGC 5 cut(s) 80, 405, 510, 645, 679
Sau3AI GATC 5 cut(s) 145, 251, 277, 664, 1141
Sau96I GGNCC 1 cut(s) 815
SchI GAGTC 3 cut(s) 444, 713, 1098
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 7 cut(s) 4, 318, 391, 439, 496, 684, 787
SfcI CTRYAG 3 cut(s) 462, 648, 924
SinI GGWCC 1 cut(s) 815
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
Sse9I AATT 7 cut(s) 112, 166, 410, 699, 842, 869, 1021
SspMI CTAG 1 cut(s) 1086
SstI GAGCTC 1 cut(s) 143
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 1099
TaqI TCGA 3 cut(s) 250, 937, 1144
TaqII GACCGA 1 cut(s) 228
TasI AATT 7 cut(s) 112, 166, 410, 699, 842, 869, 1021
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 2 cut(s) 125, 197
Tru1I TTAA 1 cut(s) 840
Tru9I TTAA 1 cut(s) 840
TscAI CASTG 3 cut(s) 319, 574, 858
TseFI GTSAC 4 cut(s) 228, 314, 419, 754
TseI GCWGC 5 cut(s) 79, 404, 509, 644, 678
Tsp45I GTSAC 4 cut(s) 228, 314, 419, 754
TspDTI ATGAA 2 cut(s) 369, 882
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 3 cut(s) 319, 574, 858
VpaK11BI GGWCC 1 cut(s) 815
XapI RAATTY 2 cut(s) 166, 869
XbaI TCTAGA 1 cut(s) 1085
XceI RCATGY 1 cut(s) 229
XmiI GTMKAC 2 cut(s) 210, 927
XspI CTAG 1 cut(s) 1086
Zsp2I ATGCAT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.