Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012553

Physical Location & Seq

Genomic Coordinates Reverse (-)

9856643 .. 9859469

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14450.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGTTTGGAATTCAAATCTTCCTCCGCCGACAATTCGACATATTTCCAACCACGCTTTCCCACAGAAGTCTGAATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAGACTACAACAACTACTACTACCATAACCAGAGGCCCCAATTTCCCACTCACTCACGTTCTCTCAGAATCTTCTTACCGGAGTCATCCAAAAATCCTATATTTTTCTTCCCTCTCTGTTTCTTACTACTTTCCGATTCTCTCAGCAACTCCGCAGCACCGCCATTAACGTTTTCATCAGAAGGAGCAAGAAGCATGTGCCTGATAGACGCAGAACAGCTCGGTCAAGAAATGGGCAACATGGAGAATAACAATAACATCGATTCCAACGACAATGACATCGAGCAGTGGTCTCTGCAAGTCGACCGGACGGAGGAGAATTTGGACCGGGAAACTCCTGCTGTGGTGAGCTCAAGTACCCAGAATATGCTCAATTCGTTTCAACTTGAAAGCATAGGTGAGGATACAGTGGTTGCAGACAGAAAGCAGAGCCTGTTCAACTTTGTTCCTGCCCTTAGGTCAGGAGAGTGGTCTGATATTGGGGGTCGAACCCATATGGAGGATACTCATTTATGCATTGGTGACTTAGCTAAGAAGTTTGGTTATAATCCACTCAGCGAGGAAGCTATCTCTTTCTATGGTGTGTTTGATGGTCACGGAGGAAAGGATGCAGCACACTTTGTTCGTGACAATTTACCAAGAGTCATTGTTGAGGATGCTGACTTTCCTTTAGAACTTGAAAAGGTGATAACAAGGTCATTTATGGAGACAGATGCTGCGTTTGCAAAGAAGTGTTCTCATGAGGCTTCCCTTGCTTCTGGCACAACTGCACTCACTGCAATGATATTTGGGAGGTCCTTGCTTGTAGCAAATGCCGGAGATTGCCGGGCTGTATTATCACGATGTGGAGTGGCTATAGAAATGTCAAAGGATCATAGGCCCTGTTGCACAAAAGAAAGAATGCGTATTGAGTCATTGGGTGGATATATTGATGATGGTTATCTAAATGGTCAGTTAGGTGTAACCCGTGCATTAGGTAATTGGCATCTTGAAGGAATGAAGGACGCGGGTGAAAGGGGCGGACCCTTGAGCGCTATACCAGAACTTAAACTGACGACACTGGGCAAAGACGATGAGTTTTTGATCATTGGCACTGATGGGATATGGGATGTGTTCACCAGCCAAAATGCTGTTGATTTCGCTCGAAGGAGACTGCAAGAGCACAATGATGTGAAGTTGTGCTGCAAGCAAATAGTAGAGGAGGCAATAAAGCGGGGAGCAACGGACAATTTGACGCTTGTTATGGTGAGTTTCCACTTGGAGCCACCCCCACATGTGGCGGTAGAGAGACCTAGATTCAGACGAAGCATTTCTGCCGAGGGACTTCAGAATCTCAAATTCTTCTTAGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

488

Amino Acids

54.4

Weight (kDa)

5.28

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01790 FvH4_1g01790
malus_domestica	MD02G1014300.v1.1 MD15G1160600.v1.1
prunus_persica	Prupe.7G255800_v2.0.a1 Prupe.7G255800_v2.0.a1
pyrus_communis	pycom02g01310 pycom15g14450 pycom15g27150
rosa_chinensis	RchiOBHm_Chr2g0086781
rosa_laevigata	RLG00000015791
rosa_multiflora	Rmu_sc0005498.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154200
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021800 Rh2BG021600 Rh2CG022400 Rh2DG022400
rosa_wichuraiana	Rw2G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	1 cut(s)	1115
AciI	CCGC	7 cut(s)	25, 261, 269, 1115, 1128, 1321, 1388
AclI	AACGTT	1 cut(s)	278
AclWI	GGATC	1 cut(s)	987
AcsI	RAATTY	4 cut(s)	9, 73, 427, 1445
AcuI	CTGAAG	1 cut(s)	1418
AdeI	CACNNNGTG	1 cut(s)	953
AfaI	GTAC	1 cut(s)	466
AfeI	AGCGCT	1 cut(s)	1141
AfiI	CCNNNNNNNGG	3 cut(s)	421, 607, 1384
AflIII	ACRYGT	1 cut(s)	1381
AgsI	TTSAA	6 cut(s)	14, 491, 497, 547, 788, 1100
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	4 cut(s)	328, 459, 638, 674
AluI	AGCT	4 cut(s)	328, 459, 638, 674
Alw21I	GWGCWC	2 cut(s)	461, 1272
Alw26I	GTCTC	5 cut(s)	105, 405, 809, 1252, 1390
AlwI	GGATC	1 cut(s)	987
AlwNI	CAGNNNCTG	2 cut(s)	541, 824
Aor51HI	AGCGCT	1 cut(s)	1141
AoxI	GGCC	2 cut(s)	143, 986
ApeKI	GCWGC	4 cut(s)	263, 719, 824, 1290
ApoI	RAATTY	4 cut(s)	9, 73, 427, 1445
Asp700I	GAANNNNTTC	1 cut(s)	1417
AspLEI	GCGC	1 cut(s)	1142
AspS9I	GGNCC	5 cut(s)	144, 433, 903, 987, 1130
AsuC2I	CCSGG	2 cut(s)	437, 935
AsuHPI	GGTGA	7 cut(s)	466, 518, 641, 805, 1130, 1216, 1366
AvaII	GGWCC	3 cut(s)	433, 903, 1130
AxyI	CCTNAGG	1 cut(s)	563
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BanII	GRGCYC	1 cut(s)	461
Bbv12I	GWGCWC	2 cut(s)	461, 1272
BbvI	GCAGC	4 cut(s)	275, 731, 811, 1277
BccI	CCATC	4 cut(s)	692, 1037, 1199, 1451
BciVI	GTATCC	2 cut(s)	505, 604
BclI	TGATCA	1 cut(s)	1191
BcnI	CCSGG	2 cut(s)	437, 935
BcoDI	GTCTC	5 cut(s)	105, 405, 809, 1252, 1390
BfaI	CTAG	1 cut(s)	1401
BfmI	CTRYAG	1 cut(s)	963
BfoI	RGCGCY	1 cut(s)	1143
BfuI	GTATCC	2 cut(s)	505, 604
BisI	GCNGC	4 cut(s)	264, 720, 825, 1291
BlsI	GCNGC	4 cut(s)	265, 721, 826, 1292
Bme1390I	CCNGG	2 cut(s)	437, 935
Bme18I	GGWCC	3 cut(s)	433, 903, 1130
BmgT120I	GGNCC	5 cut(s)	144, 433, 903, 987, 1130
BmiI	GGNNCC	3 cut(s)	146, 1132, 1371
BmrFI	CCNGG	2 cut(s)	437, 935
BmrI	ACTGGG	1 cut(s)	1178
BmsI	GCATC	4 cut(s)	706, 754, 811, 1102
BmuI	ACTGGG	1 cut(s)	1178
BpuEI	CTTGAG	2 cut(s)	445, 1156
BpuMI	CCSGG	2 cut(s)	437, 935
Bsa29I	ATCGAT	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaI	GGTCTC	2 cut(s)	405, 1390
BsaJI	CCNNGG	1 cut(s)	1425
BsaWI	WCCGGW	2 cut(s)	187, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 607, 1384
Bse1I	ACTGG	1 cut(s)	1173
Bse21I	CCTNAGG	1 cut(s)	563
Bse3DI	GCAATG	1 cut(s)	894
Bse8I	GATNNNNATC	1 cut(s)	1047
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	1425
BseGI	GGATG	4 cut(s)	194, 721, 769, 1222
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	3 cut(s)	421, 607, 1384
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	4 cut(s)	121, 187, 265, 676
BseNI	ACTGG	1 cut(s)	1173
BseRI	GAGGAG	2 cut(s)	437, 1322
BseXI	GCAGC	4 cut(s)	275, 731, 811, 1277
BsgI	GTGCAG	1 cut(s)	861
Bsh1236I	CGCG	1 cut(s)	1115
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	145, 988
BshVI	ATCGAT	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	461, 1272
BsiSI	CCGG	5 cut(s)	188, 415, 436, 924, 934
BslFI	GGGAC	1 cut(s)	1443
BslI	CCNNNNNNNGG	3 cut(s)	421, 607, 1384
BsmAI	GTCTC	5 cut(s)	105, 405, 809, 1252, 1390
BsmFI	GGGAC	1 cut(s)	1443
BsmI	GAATGC	1 cut(s)	1014
BsnI	GGCC	2 cut(s)	145, 988
Bso31I	GGTCTC	2 cut(s)	405, 1390
Bsp1286I	GDGCHC	2 cut(s)	461, 1272
Bsp143I	GATC	2 cut(s)	979, 1191
BspACI	CCGC	7 cut(s)	25, 261, 269, 1115, 1128, 1321, 1388
BspANI	GGCC	2 cut(s)	145, 988
BspCNI	CTCAG	4 cut(s)	120, 186, 264, 675
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	1115
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	3 cut(s)	146, 1132, 1371
BspPI	GGATC	1 cut(s)	987
BspTNI	GGTCTC	2 cut(s)	405, 1390
BsrDI	GCAATG	1 cut(s)	894
BsrI	ACTGG	1 cut(s)	1173
BssECI	CCNNGG	1 cut(s)	1425
BssMI	GATC	2 cut(s)	979, 1191
Bst4CI	ACNGT	1 cut(s)	517
BstAPI	GCANNNNNTGC	1 cut(s)	884
BstC8I	GCNNGC	1 cut(s)	1295
BstDEI	CTNAG	8 cut(s)	107, 173, 251, 563, 634, 639, 662, 1453
BstF5I	GGATG	4 cut(s)	194, 721, 769, 1222
BstFNI	CGCG	1 cut(s)	1115
BstH2I	RGCGCY	1 cut(s)	1143
BstHHI	GCGC	1 cut(s)	1142
BstKTI	GATC	2 cut(s)	982, 1194
BstMAI	GTCTC	5 cut(s)	105, 405, 809, 1252, 1390
BstMBI	GATC	2 cut(s)	979, 1191
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	3 cut(s)	830, 860, 884
BstNSI	RCATGY	2 cut(s)	307, 1385
BstSCI	CCNGG	2 cut(s)	435, 933
BstSFI	CTRYAG	1 cut(s)	963
BstUI	CGCG	1 cut(s)	1115
BstV1I	GCAGC	4 cut(s)	275, 731, 811, 1277
Bsu15I	ATCGAT	1 cut(s)	369
Bsu36I	CCTNAGG	1 cut(s)	563
BsuI	GTATCC	2 cut(s)	505, 604
BsuRI	GGCC	2 cut(s)	145, 988
BsuTUI	ATCGAT	1 cut(s)	369
BtsCI	GGATG	4 cut(s)	194, 721, 769, 1222
BtsI	GCAGTG	2 cut(s)	401, 882
BtsIMutI	CAGTG	5 cut(s)	401, 522, 882, 1166, 1200
Cac8I	GCNNGC	1 cut(s)	1295
CaiI	CAGNNNCTG	2 cut(s)	541, 824
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	1 cut(s)	1142
Cfr13I	GGNCC	5 cut(s)	144, 433, 903, 987, 1130
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	3 cut(s)	326, 1121, 1351
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	4 cut(s)	304, 349, 848, 1382
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	8 cut(s)	107, 173, 251, 563, 634, 639, 662, 1453
DpnI	GATC	2 cut(s)	981, 1193
DpnII	GATC	2 cut(s)	979, 1191
DraIII	CACNNNGTG	1 cut(s)	953
EciI	GGCGGA	2 cut(s)	14, 1143
Ecl136II	GAGCTC	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	461
Eco31I	GGTCTC	2 cut(s)	405, 1390
Eco47I	GGWCC	3 cut(s)	433, 903, 1130
Eco47III	AGCGCT	1 cut(s)	1141
Eco53kI	GAGCTC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	1418
Eco81I	CCTNAGG	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	459
EcoO109I	RGGNCCY	3 cut(s)	144, 903, 987
EcoRI	GAATTC	2 cut(s)	9, 73
EcoT22I	ATGCAT	1 cut(s)	626
EcoT38I	GRGCYC	1 cut(s)	461
FaeI	CATG	4 cut(s)	307, 352, 851, 1385
FaqI	GGGAC	1 cut(s)	1443
FatI	CATG	4 cut(s)	303, 348, 847, 1381
FauI	CCCGC	2 cut(s)	1108, 1314
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	1191
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	264, 720, 825, 1291
FokI	GGATG	4 cut(s)	181, 728, 776, 1229
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	4 cut(s)	264, 720, 825, 1291
FspBI	CTAG	1 cut(s)	1401
GlaI	GCGC	1 cut(s)	1141
GluI	GCNGC	4 cut(s)	264, 720, 825, 1291
HaeII	RGCGCY	1 cut(s)	1143
HaeIII	GGCC	2 cut(s)	145, 988
HapII	CCGG	5 cut(s)	188, 415, 436, 924, 934
HgaI	GACGC	3 cut(s)	326, 1121, 1351
HhaI	GCGC	1 cut(s)	1142
Hin1II	CATG	4 cut(s)	307, 352, 851, 1385
Hin6I	GCGC	1 cut(s)	1140
HinP1I	GCGC	1 cut(s)	1140
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	8 cut(s)	177, 191, 245, 371, 750, 1019, 1404, 1438
HpaII	CCGG	5 cut(s)	188, 415, 436, 924, 934
HphI	GGTGA	7 cut(s)	466, 518, 641, 805, 1130, 1216, 1366
Hpy166II	GTNNAC	2 cut(s)	412, 1224
Hpy188I	TCNGA	8 cut(s)	72, 110, 176, 244, 289, 583, 1409, 1437
Hpy188III	TCNNGA	6 cut(s)	335, 570, 734, 848, 948, 1097
Hpy8I	GTNNAC	2 cut(s)	412, 1224
HpyAV	CCTTC	4 cut(s)	284, 1094, 1102, 1248
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	166, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	830, 860, 884
HpyF3I	CTNAG	8 cut(s)	107, 173, 251, 563, 634, 639, 662, 1453
HpySE526I	ACGT	2 cut(s)	166, 278
Hsp92II	CATG	4 cut(s)	307, 352, 851, 1385
HspAI	GCGC	1 cut(s)	1140
Ksp22I	TGATCA	1 cut(s)	1191
Kzo9I	GATC	2 cut(s)	979, 1191
LmnI	GCTCC	3 cut(s)	293, 1325, 1369
Lsp1109I	GCAGC	4 cut(s)	275, 731, 811, 1277
LweI	GCATC	4 cut(s)	706, 754, 811, 1102
MaeI	CTAG	1 cut(s)	1401
MaeII	ACGT	2 cut(s)	166, 278
MaeIII	GTNAC	4 cut(s)	629, 701, 734, 1069
MalI	GATC	2 cut(s)	981, 1193
MboI	GATC	2 cut(s)	979, 1191
MboII	GAAGA	4 cut(s)	10, 172, 208, 1441
MhlI	GDGCHC	2 cut(s)	461, 1272
MlyI	GAGTC	3 cut(s)	200, 759, 1028
MmeI	TCCRAC	2 cut(s)	71, 399
Mph1103I	ATGCAT	1 cut(s)	626
MroXI	GAANNNNTTC	1 cut(s)	1417
MseI	TTAA	2 cut(s)	275, 1155
MslI	CAYNNNNRTG	2 cut(s)	887, 1275
MspI	CCGG	5 cut(s)	188, 415, 436, 924, 934
MspR9I	CCNGG	2 cut(s)	437, 935
Mva1269I	GAATGC	1 cut(s)	1014
MvnI	CGCG	1 cut(s)	1115
MwoI	GCNNNNNNNGC	3 cut(s)	830, 860, 884
NciI	CCSGG	2 cut(s)	437, 935
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	2 cut(s)	979, 1191
NlaIII	CATG	4 cut(s)	307, 352, 851, 1385
NlaIV	GGNNCC	3 cut(s)	146, 1132, 1371
NmeAIII	GCCGAG	1 cut(s)	1450
NmuCI	GTSAC	3 cut(s)	629, 701, 734
NsiI	ATGCAT	1 cut(s)	626
NspI	RCATGY	2 cut(s)	307, 1385
PagI	TCATGA	1 cut(s)	847
PciI	ACATGT	1 cut(s)	1381
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	1 cut(s)	1014
PdmI	GAANNNNTTC	1 cut(s)	1417
PfeI	GAWTC	5 cut(s)	177, 245, 371, 1404, 1438
PkrI	GCNGC	4 cut(s)	265, 721, 826, 1292
PleI	GAGTC	3 cut(s)	199, 758, 1027
PpsI	GAGTC	3 cut(s)	199, 758, 1027
PpuMI	RGGWCCY	1 cut(s)	903
PscI	ACATGT	1 cut(s)	1381
PsiI	TTATAA	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	461
Psp1406I	AACGTT	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	903
PspN4I	GGNNCC	3 cut(s)	146, 1132, 1371
PspPI	GGNCC	5 cut(s)	144, 433, 903, 987, 1130
PspPPI	RGGWCCY	1 cut(s)	903
PstNI	CAGNNNCTG	2 cut(s)	541, 824
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	2 cut(s)	887, 1275
SacI	GAGCTC	1 cut(s)	461
SalI	GTCGAC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	275, 1155
SatI	GCNGC	4 cut(s)	264, 720, 825, 1291
Sau3AI	GATC	2 cut(s)	979, 1191
Sau96I	GGNCC	5 cut(s)	144, 433, 903, 987, 1130
SchI	GAGTC	3 cut(s)	200, 759, 1028
ScrFI	CCNGG	2 cut(s)	437, 935
SduI	GDGCHC	2 cut(s)	461, 1272
SfaNI	GCATC	4 cut(s)	706, 754, 811, 1102
SfcI	CTRYAG	1 cut(s)	963
SinI	GGWCC	3 cut(s)	433, 903, 1130
SmiMI	CAYNNNNRTG	2 cut(s)	887, 1275
SmlI	CTYRAG	2 cut(s)	460, 1135
SmoI	CTYRAG	2 cut(s)	460, 1135
SsiI	CCGC	7 cut(s)	25, 261, 269, 1115, 1128, 1321, 1388
SspMI	CTAG	1 cut(s)	1401
SstI	GAGCTC	1 cut(s)	461
StyD4I	CCNGG	2 cut(s)	435, 933
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	169, 281
TaqI	TCGA	6 cut(s)	36, 369, 390, 411, 595, 1252
TaqII	GACCGA	1 cut(s)	320
TfiI	GAWTC	5 cut(s)	177, 245, 371, 1404, 1438
Tru1I	TTAA	2 cut(s)	275, 1155
Tru9I	TTAA	2 cut(s)	275, 1155
TscAI	CASTG	5 cut(s)	401, 522, 889, 1173, 1207
TseFI	GTSAC	3 cut(s)	629, 701, 734
TseI	GCWGC	4 cut(s)	263, 719, 824, 1290
Tsp45I	GTSAC	3 cut(s)	629, 701, 734
TspDTI	ATGAA	2 cut(s)	273, 1121
TspGWI	ACGGA	3 cut(s)	434, 720, 1346
TspRI	CASTG	5 cut(s)	401, 522, 889, 1173, 1207
VpaK11BI	GGWCC	3 cut(s)	433, 903, 1130
XapI	RAATTY	4 cut(s)	9, 73, 427, 1445
XceI	RCATGY	2 cut(s)	307, 1385
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	1417
XspI	CTAG	1 cut(s)	1401
Zsp2I	ATGCAT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.