FvH4_1g01790

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012553
Physical Location & Seq
Reverse (-)
944447 .. 947487
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01790.t2

Sequence Viewer

Length: 1056 bp
ATGGGAAACATGGAGAACAACAACAAGGAATCTATGGTGATGAGCTCCGATCAGCAGAGCACCGTGTTGAATTCGTTTCAGCTGGAAAGCATATCTGAGGATTCAGTAGTTGTAGATCCAAAACAGAACATGTTACACTTTGTCCCTGCCCTTCGGTCAGGAGAGTGGTCTGATATTGGATTTCGCTCCCATATGGAAGATACTCATATATGCATTGGTGACTTGGCTAAGAAATTTGGTTATAATGTACTCAATGACGAAGAAGCTATCTCCTTCTATGGTGTATTTGATGGTCATGGGGGAAAAGATGCAGCGCAATTTGTTCGTGACAACTTGCCAAGAGTTATTGTTGAGGATTCTGACTTTCCGGTAGAGCTTGAAAAGGTAATAACAAGGTCATTTGTTGAGACAGATGCTGCATTTGCAAAAACTTGCTCTGTTCGGTCTTCCCTTGCTTCTGGCACAACTGCACTCACTGCAATGATATTTGGGAGGTCTTTGCTTGTGGCGAATGCCGGAGATTGTAGGGCTATATTGTCACGAAATGGAGCAGCTATAGAAATGTCAAAAGATCATAGACCCTGCTGCACAAAAGAAAGGATGAGGATTGAGTCTTTGGGTGGATATGTTGATGATGGTTATCTGAATGGTCAGTTAGGGGTTACCCGTGCATTAGGTGATTGGCATCTTGAAGGATTGAAGGATGAAGGTGAAAGGGGAGGACCCTTGAGTGCTGAGCCAGAACTTAAATTGACAACACTGACCAAGGATGATGAATTTTTAATCATTGGTAGTGATGGAATATGGGATGTCTTCACCAACCAAAATGCCGTAGACTTTGCTCGAAGGAAACTCCAAGAGCACAATGATGTGAAGCTGTGTTGCAAGCAAATAGTAGAGGAGGCAATAAAACGTGGTGCAACTGACAATTTGACACTTGTTATGGTGAGTTTCCACTTGGAGCCACCTCCACATGTGGTAGTCGAAAGGTCTAGAGTCAGACGTAGTATTTCTGCTGAGGGACTACAAAATCTTCAGTTCTTCTTAGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

352

Amino Acids

38.92

Weight (kDa)

4.99

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 67 - 317 2.1e-70 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccI GTMKAC 1 cut(s) 834
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 3 cut(s) 70, 233, 776
AcuI CTGAAG 1 cut(s) 1019
AfaI GTAC 1 cut(s) 249
AflIII ACRYGT 2 cut(s) 129, 973
AgsI TTSAA 4 cut(s) 70, 380, 692, 700
AluBI AGCT 6 cut(s) 45, 82, 266, 376, 554, 877
AluI AGCT 6 cut(s) 45, 82, 266, 376, 554, 877
Alw21I GWGCWC 3 cut(s) 47, 62, 864
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 416
ApeKI GCWGC 4 cut(s) 311, 416, 551, 585
ApoI RAATTY 3 cut(s) 70, 233, 776
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 722
AsuHPI GGTGA 6 cut(s) 49, 230, 689, 722, 808, 958
AvaII GGWCC 1 cut(s) 722
BanII GRGCYC 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 438, 805
Bbv12I GWGCWC 3 cut(s) 47, 62, 864
BbvCI CCTCAGC 1 cut(s) 1017
BbvI GCAGC 4 cut(s) 323, 403, 563, 572
BccI CCATC 3 cut(s) 284, 629, 791
BceAI ACGGC 1 cut(s) 815
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 1 cut(s) 993
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 4 cut(s) 312, 417, 552, 586
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 4 cut(s) 313, 418, 553, 587
Bme18I GGWCC 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 722
BmiI GGNNCC 2 cut(s) 724, 963
BmsI GCATC 3 cut(s) 298, 403, 694
BpiI GAAGAC 2 cut(s) 438, 805
Bpu10I CCTNAGC 1 cut(s) 1017
Bpu1102I GCTNAGC 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 748
BsaBI GATNNNNATC 2 cut(s) 639, 684
BsaJI CCNNGG 1 cut(s) 765
BsaWI WCCGGW 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 2 cut(s) 639, 684
BseDI CCNNGG 1 cut(s) 765
BseGI GGATG 4 cut(s) 606, 709, 775, 814
BseJI GATNNNNATC 2 cut(s) 639, 684
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 3 cut(s) 87, 726, 1008
BseRI GAGGAG 1 cut(s) 914
BseXI GCAGC 4 cut(s) 323, 403, 563, 572
BsgI GTGCAG 2 cut(s) 453, 571
BsiHKAI GWGCWC 3 cut(s) 47, 62, 864
BsiSI CCGG 2 cut(s) 368, 516
BslFI GGGAC 2 cut(s) 128, 1035
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 2 cut(s) 128, 1035
BsmI GAATGC 1 cut(s) 517
Bsp1286I GDGCHC 3 cut(s) 47, 62, 864
Bsp143I GATC 4 cut(s) 49, 115, 571, 1048
Bsp1720I GCTNAGC 1 cut(s) 735
BspCNI CTCAG 3 cut(s) 88, 727, 1009
BspLI GGNNCC 2 cut(s) 724, 963
BspPI GGATC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 486
BssECI CCNNGG 1 cut(s) 765
BssMI GATC 4 cut(s) 49, 115, 571, 1048
BssT1I CCWWGG 1 cut(s) 765
Bst4CI ACNGT 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 887
BstDEI CTNAG 5 cut(s) 96, 228, 735, 1017, 1045
BstEII GGTNACC 1 cut(s) 661
BstF5I GGATG 4 cut(s) 606, 709, 775, 814
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 4 cut(s) 52, 118, 574, 1051
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 4 cut(s) 49, 115, 571, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 422, 476
BstNSI RCATGY 2 cut(s) 133, 977
BstPI GGTNACC 1 cut(s) 661
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 4 cut(s) 323, 403, 563, 572
BstV2I GAAGAC 2 cut(s) 438, 805
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtsCI GGATG 4 cut(s) 606, 709, 775, 814
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 474, 758
Cac8I GCNNGC 1 cut(s) 887
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 248
CviAII CATG 4 cut(s) 10, 130, 296, 974
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 5 cut(s) 96, 228, 735, 1017, 1045
DpnI GATC 4 cut(s) 51, 117, 573, 1050
DpnII GATC 4 cut(s) 49, 115, 571, 1048
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 765
Eco24I GRGCYC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 722
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 1019
Eco91I GGTNACC 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 661
EcoRI GAATTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 765
EcoT22I ATGCAT 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 4 cut(s) 13, 133, 299, 977
FaqI GGGAC 2 cut(s) 128, 1035
FatI CATG 4 cut(s) 9, 129, 295, 973
FauNDI CATATG 1 cut(s) 192
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 4 cut(s) 312, 417, 552, 586
FokI GGATG 4 cut(s) 613, 716, 782, 821
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 4 cut(s) 312, 417, 552, 586
FspBI CTAG 1 cut(s) 993
GlaI GCGC 1 cut(s) 315
GluI GCNGC 4 cut(s) 312, 417, 552, 586
HapII CCGG 2 cut(s) 368, 516
HhaI GCGC 1 cut(s) 316
Hin1II CATG 4 cut(s) 13, 133, 299, 977
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 5 cut(s) 29, 101, 356, 611, 996
HpaII CCGG 2 cut(s) 368, 516
HphI GGTGA 6 cut(s) 49, 230, 689, 722, 808, 958
Hpy166II GTNNAC 1 cut(s) 835
Hpy188I TCNGA 6 cut(s) 49, 97, 172, 361, 645, 1001
Hpy188III TCNNGA 5 cut(s) 159, 326, 540, 689, 993
Hpy8I GTNNAC 1 cut(s) 835
HpyAV CCTTC 6 cut(s) 161, 283, 686, 694, 701, 840
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 2 cut(s) 913, 1003
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 476
HpyF3I CTNAG 5 cut(s) 96, 228, 735, 1017, 1045
HpySE526I ACGT 2 cut(s) 913, 1003
Hsp92II CATG 4 cut(s) 13, 133, 299, 977
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 4 cut(s) 49, 115, 571, 1048
LmnI GCTCC 4 cut(s) 50, 191, 548, 961
LpnPI CCDG 8 cut(s) 68, 144, 159, 381, 444, 529, 595, 753
Lsp1109I GCAGC 4 cut(s) 323, 403, 563, 572
LweI GCATC 3 cut(s) 298, 403, 694
MaeI CTAG 1 cut(s) 993
MaeII ACGT 2 cut(s) 913, 1003
MaeIII GTNAC 5 cut(s) 132, 218, 326, 537, 661
MalI GATC 4 cut(s) 51, 117, 573, 1050
MboI GATC 4 cut(s) 49, 115, 571, 1048
MboII GAAGA 6 cut(s) 209, 272, 438, 805, 1025, 1033
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 3 cut(s) 47, 62, 864
MluCI AATT 6 cut(s) 70, 233, 317, 749, 776, 928
MlyI GAGTC 2 cut(s) 620, 1005
MnlI CCTC 9 cut(s) 91, 346, 486, 597, 713, 892, 895, 978, 1012
Mph1103I ATGCAT 1 cut(s) 215
MseI TTAA 2 cut(s) 747, 782
MslI CAYNNNNRTG 2 cut(s) 479, 867
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 2 cut(s) 368, 516
Mva1269I GAATGC 1 cut(s) 517
MwoI GCNNNNNNNGC 2 cut(s) 422, 476
NdeI CATATG 1 cut(s) 192
NdeII GATC 4 cut(s) 49, 115, 571, 1048
NlaIII CATG 4 cut(s) 13, 133, 299, 977
NlaIV GGNNCC 2 cut(s) 724, 963
NmuCI GTSAC 3 cut(s) 218, 326, 537
NsiI ATGCAT 1 cut(s) 215
NspI RCATGY 2 cut(s) 133, 977
PciI ACATGT 2 cut(s) 129, 973
PctI GAATGC 1 cut(s) 517
PfeI GAWTC 3 cut(s) 29, 101, 356
PkrI GCNGC 4 cut(s) 313, 418, 553, 587
PleI GAGTC 2 cut(s) 619, 1004
PpsI GAGTC 2 cut(s) 619, 1004
PpuMI RGGWCCY 1 cut(s) 722
PscI ACATGT 2 cut(s) 129, 973
PsiI TTATAA 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 722
PspEI GGTNACC 1 cut(s) 661
PspN4I GGNNCC 2 cut(s) 724, 963
PspPI GGNCC 1 cut(s) 722
PspPPI RGGWCCY 1 cut(s) 722
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
RseI CAYNNNNRTG 2 cut(s) 479, 867
SacI GAGCTC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 747, 782
SatI GCNGC 4 cut(s) 312, 417, 552, 586
Sau3AI GATC 4 cut(s) 49, 115, 571, 1048
Sau96I GGNCC 1 cut(s) 722
SchI GAGTC 2 cut(s) 620, 1005
SduI GDGCHC 3 cut(s) 47, 62, 864
SfaNI GCATC 3 cut(s) 298, 403, 694
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 722
SmiMI CAYNNNNRTG 2 cut(s) 479, 867
SmlI CTYRAG 1 cut(s) 727
SmoI CTYRAG 1 cut(s) 727
Sse9I AATT 6 cut(s) 70, 233, 317, 749, 776, 928
SspMI CTAG 1 cut(s) 993
SstI GAGCTC 1 cut(s) 47
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 2 cut(s) 916, 1006
TaqI TCGA 2 cut(s) 844, 984
TaqII GACCGA 2 cut(s) 144, 432
TasI AATT 6 cut(s) 70, 233, 317, 749, 776, 928
TatI WGTACW 1 cut(s) 247
TfiI GAWTC 3 cut(s) 29, 101, 356
Tru1I TTAA 2 cut(s) 747, 782
Tru9I TTAA 2 cut(s) 747, 782
TscAI CASTG 2 cut(s) 481, 765
TseFI GTSAC 3 cut(s) 218, 326, 537
TseI GCWGC 4 cut(s) 311, 416, 551, 585
Tsp45I GTSAC 3 cut(s) 218, 326, 537
TspDTI ATGAA 2 cut(s) 720, 789
TspRI CASTG 2 cut(s) 481, 765
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 3 cut(s) 70, 233, 776
XbaI TCTAGA 1 cut(s) 992
XceI RCATGY 2 cut(s) 133, 977
XmiI GTMKAC 1 cut(s) 834
XspI CTAG 1 cut(s) 993
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.