Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005498.1

Orthogroup ID

OG0012553

Physical Location & Seq

Genomic Coordinates Reverse (-)

14817 .. 17006

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005498.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgggaaacatggagaacaataacatcaataccaacaacaacaacaacaacaacaacaacagcaagcagcagtctttgcattgtgaaaacgagaagggtaatttggagaaggaatctccggtgatgagctccgatcaacagagcaccgtgttgaattcttttcagcttgaaagcatatctgaggattcagtagctgtagaccgaaaacagaacatgtcacattttgtccctgcccttcgatcaggagagtggtctgatataggagatcgtccccatatggaagatactcatatatgcatcagtgacttggctaagaagtttggttataatgtactcaatgatgaagctatctccttctatggtgtatttgatggtcatgggggaaaggatgcagcgcaatttgttcgtgacaacctgccaagagtcatcgttgaggatgctgacttccctgtagagcttgaaaaggtgataacaaggtcatttgttgagacagatgctgcatttgcaaaaacttgctcacttcagtcttcccttgcttctggcacaactgcactcactgcaatgatatttgggaggtctttgcttgtggcgaatgctggagattgcagggctatattgtcgcgaaatggagcagctatagaaatgtcaaaagatcatagaccctgctgcacaaaagaaaggatgcgaattgagtctttgggtggatatgttgatgatggttatctgaatggtcagttaggggtcacccgtgcattaggtgattggcatcttgaaggattgaaggatgagggtgaaaggggaggacccttgagtgctgaaccggaacttaaattgacaacactgaccaaagatgatgaatttttgatcattggtagtgatggaatatgggatgtgttcaccaaccaaaatgctgtagactttgctcgaaggaaactccaagagcgcaatgatgtgaagctgtgttgcaagcaaatagtagaggaggcaataaaacgaggcgcaaccgacaatttgacacttgttatggtgagtttccacttggagccacctccacatctggtggtagaaaggtctagagtcagacgtagtatttctgctgagggactacaaaatcttcagtccttcttagatcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

378

Amino Acids

41.93

Weight (kDa)

5.07

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01790 FvH4_1g01790
malus_domestica	MD02G1014300.v1.1 MD15G1160600.v1.1
prunus_persica	Prupe.7G255800_v2.0.a1 Prupe.7G255800_v2.0.a1
pyrus_communis	pycom02g01310 pycom15g14450 pycom15g27150
rosa_chinensis	RchiOBHm_Chr2g0086781
rosa_laevigata	RLG00000015791
rosa_multiflora	Rmu_sc0005498.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154200
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021800 Rh2BG021600 Rh2CG022400 Rh2DG022400
rosa_wichuraiana	Rw2G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	423
AccI	GTMKAC	2 cut(s)	198, 915
AccII	CGCG	1 cut(s)	622
AcsI	RAATTY	2 cut(s)	154, 857
AcuI	CTGAAG	2 cut(s)	506, 1100
AfaI	GTAC	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	5 cut(s)	154, 170, 461, 773, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	7 cut(s)	129, 166, 194, 347, 457, 635, 958
AluI	AGCT	7 cut(s)	129, 166, 194, 347, 457, 635, 958
Alw21I	GWGCWC	2 cut(s)	131, 146
Alw26I	GTCTC	1 cut(s)	482
AlwNI	CAGNNNCTG	2 cut(s)	194, 497
ApeKI	GCWGC	5 cut(s)	67, 392, 497, 632, 666
ApoI	RAATTY	2 cut(s)	154, 857
AspLEI	GCGC	3 cut(s)	397, 945, 1001
AspS9I	GGNCC	1 cut(s)	803
AsuHPI	GGTGA	7 cut(s)	133, 478, 736, 770, 803, 889, 1039
AvaII	GGWCC	1 cut(s)	803
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	2 cut(s)	131, 146
BbvCI	CCTCAGC	1 cut(s)	1098
BbvI	GCAGC	5 cut(s)	79, 404, 484, 644, 653
BccI	CCATC	3 cut(s)	365, 710, 872
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BclI	TGATCA	1 cut(s)	864
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	1074
BfmI	CTRYAG	4 cut(s)	195, 450, 636, 912
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	5 cut(s)	68, 393, 498, 633, 667
BlsI	GCNGC	5 cut(s)	69, 394, 499, 634, 668
Bme18I	GGWCC	1 cut(s)	803
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	2 cut(s)	805, 1044
BmsI	GCATC	6 cut(s)	306, 379, 427, 484, 672, 775
BpiI	GAAGAC	1 cut(s)	519
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	1098
BpuEI	CTTGAG	1 cut(s)	829
Bsa29I	ATCGAT	1 cut(s)	1132
BsaBI	GATNNNNATC	2 cut(s)	720, 765
BsaWI	WCCGGW	2 cut(s)	118, 820
Bse3DI	GCAATG	2 cut(s)	567, 952
Bse8I	GATNNNNATC	2 cut(s)	720, 765
BseCI	ATCGAT	1 cut(s)	1132
BseGI	GGATG	5 cut(s)	394, 442, 687, 790, 895
BseJI	GATNNNNATC	2 cut(s)	720, 765
BseMI	GCAATG	2 cut(s)	567, 952
BseMII	CTCAG	2 cut(s)	171, 1089
BseRI	GAGGAG	1 cut(s)	995
BseXI	GCAGC	5 cut(s)	79, 404, 484, 644, 653
BsgI	GTGCAG	2 cut(s)	534, 652
Bsh1236I	CGCG	1 cut(s)	622
BshVI	ATCGAT	1 cut(s)	1132
BsiHKAI	GWGCWC	2 cut(s)	131, 146
BsiSI	CCGG	2 cut(s)	119, 821
BslFI	GGGAC	3 cut(s)	212, 255, 1116
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	3 cut(s)	212, 255, 1116
BsmI	GAATGC	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	131, 146
Bsp143I	GATC	6 cut(s)	133, 239, 265, 652, 864, 1129
Bsp68I	TCGCGA	1 cut(s)	622
BspCNI	CTCAG	2 cut(s)	172, 1090
BspDI	ATCGAT	1 cut(s)	1132
BspFNI	CGCG	1 cut(s)	622
BspLI	GGNNCC	2 cut(s)	805, 1044
BspMI	ACCTGC	1 cut(s)	423
BsrDI	GCAATG	2 cut(s)	567, 952
BssMI	GATC	6 cut(s)	133, 239, 265, 652, 864, 1129
Bst4CI	ACNGT	1 cut(s)	148
BstAPI	GCANNNNNTGC	2 cut(s)	76, 557
BstC8I	GCNNGC	2 cut(s)	65, 968
BstDEI	CTNAG	4 cut(s)	180, 312, 1098, 1126
BstEII	GGTNACC	1 cut(s)	742
BstF5I	GGATG	5 cut(s)	394, 442, 687, 790, 895
BstFNI	CGCG	1 cut(s)	622
BstHHI	GCGC	3 cut(s)	397, 945, 1001
BstKTI	GATC	6 cut(s)	136, 242, 268, 655, 867, 1132
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	6 cut(s)	133, 239, 265, 652, 864, 1129
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 503, 557
BstNSI	RCATGY	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	742
BstSFI	CTRYAG	4 cut(s)	195, 450, 636, 912
BstUI	CGCG	1 cut(s)	622
BstV1I	GCAGC	5 cut(s)	79, 404, 484, 644, 653
BstV2I	GAAGAC	1 cut(s)	519
Bsu15I	ATCGAT	1 cut(s)	1132
BsuTUI	ATCGAT	1 cut(s)	1132
BtsCI	GGATG	5 cut(s)	394, 442, 687, 790, 895
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	3 cut(s)	307, 555, 839
BtuMI	TCGCGA	1 cut(s)	622
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	65, 968
CaiI	CAGNNNCTG	2 cut(s)	194, 497
CfoI	GCGC	3 cut(s)	397, 945, 1001
Cfr13I	GGNCC	1 cut(s)	803
ClaI	ATCGAT	1 cut(s)	1132
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	3 cut(s)	10, 214, 377
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	4 cut(s)	180, 312, 1098, 1126
DpnI	GATC	6 cut(s)	135, 241, 267, 654, 866, 1131
DpnII	GATC	6 cut(s)	133, 239, 265, 652, 864, 1129
Ecl136II	GAGCTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	803
Eco53kI	GAGCTC	1 cut(s)	129
Eco57I	CTGAAG	2 cut(s)	506, 1100
Eco91I	GGTNACC	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	742
EcoRI	GAATTC	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	3 cut(s)	13, 217, 380
FaqI	GGGAC	3 cut(s)	212, 255, 1116
FatI	CATG	3 cut(s)	9, 213, 376
FauNDI	CATATG	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	864
FblI	GTMKAC	2 cut(s)	198, 915
Fnu4HI	GCNGC	5 cut(s)	68, 393, 498, 633, 667
FokI	GGATG	5 cut(s)	401, 449, 694, 797, 902
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	5 cut(s)	68, 393, 498, 633, 667
FspBI	CTAG	1 cut(s)	1074
GlaI	GCGC	3 cut(s)	396, 944, 1000
GluI	GCNGC	5 cut(s)	68, 393, 498, 633, 667
GsuI	CTGGAG	1 cut(s)	618
HapII	CCGG	2 cut(s)	119, 821
HhaI	GCGC	3 cut(s)	397, 945, 1001
Hin1II	CATG	3 cut(s)	13, 217, 380
Hin6I	GCGC	3 cut(s)	395, 943, 999
HinP1I	GCGC	3 cut(s)	395, 943, 999
HinfI	GANTC	5 cut(s)	113, 185, 423, 692, 1077
HpaII	CCGG	2 cut(s)	119, 821
HphI	GGTGA	7 cut(s)	133, 478, 736, 770, 803, 889, 1039
Hpy166II	GTNNAC	3 cut(s)	199, 897, 916
Hpy188I	TCNGA	5 cut(s)	133, 181, 256, 726, 1082
Hpy188III	TCNNGA	5 cut(s)	243, 407, 621, 770, 1074
Hpy8I	GTNNAC	3 cut(s)	199, 897, 916
HpyAV	CCTTC	8 cut(s)	88, 103, 245, 364, 767, 775, 921, 1132
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	1084
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 503, 557
HpyF3I	CTNAG	4 cut(s)	180, 312, 1098, 1126
HpySE526I	ACGT	1 cut(s)	1084
Hsp92II	CATG	3 cut(s)	13, 217, 380
HspAI	GCGC	3 cut(s)	395, 943, 999
Ksp22I	TGATCA	1 cut(s)	864
Kzo9I	GATC	6 cut(s)	133, 239, 265, 652, 864, 1129
LmnI	GCTCC	3 cut(s)	134, 629, 1042
Lsp1109I	GCAGC	5 cut(s)	79, 404, 484, 644, 653
LweI	GCATC	6 cut(s)	306, 379, 427, 484, 672, 775
MaeI	CTAG	1 cut(s)	1074
MaeII	ACGT	1 cut(s)	1084
MaeIII	GTNAC	4 cut(s)	216, 302, 407, 742
MalI	GATC	6 cut(s)	135, 241, 267, 654, 866, 1131
MboI	GATC	6 cut(s)	133, 239, 265, 652, 864, 1129
MboII	GAAGA	3 cut(s)	293, 519, 1106
MhlI	GDGCHC	2 cut(s)	131, 146
MluCI	AATT	7 cut(s)	100, 154, 398, 687, 830, 857, 1009
MlyI	GAGTC	3 cut(s)	432, 701, 1086
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	1 cut(s)	828
MslI	CAYNNNNRTG	1 cut(s)	560
MspI	CCGG	2 cut(s)	119, 821
Mva1269I	GAATGC	1 cut(s)	598
MvnI	CGCG	1 cut(s)	622
MwoI	GCNNNNNNNGC	3 cut(s)	76, 503, 557
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	6 cut(s)	133, 239, 265, 652, 864, 1129
NlaIII	CATG	3 cut(s)	13, 217, 380
NlaIV	GGNNCC	2 cut(s)	805, 1044
NmuCI	GTSAC	4 cut(s)	216, 302, 407, 742
NruI	TCGCGA	1 cut(s)	622
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	217
PciI	ACATGT	1 cut(s)	213
PctI	GAATGC	1 cut(s)	598
PfeI	GAWTC	2 cut(s)	113, 185
PkrI	GCNGC	5 cut(s)	69, 394, 499, 634, 668
PleI	GAGTC	3 cut(s)	431, 700, 1085
PpsI	GAGTC	3 cut(s)	431, 700, 1085
PpuMI	RGGWCCY	1 cut(s)	803
PscI	ACATGT	1 cut(s)	213
PsiI	TTATAA	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	803
PspEI	GGTNACC	1 cut(s)	742
PspN4I	GGNNCC	2 cut(s)	805, 1044
PspPI	GGNCC	1 cut(s)	803
PspPPI	RGGWCCY	1 cut(s)	803
PstNI	CAGNNNCTG	2 cut(s)	194, 497
RruI	TCGCGA	1 cut(s)	622
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	828
SatI	GCNGC	5 cut(s)	68, 393, 498, 633, 667
Sau3AI	GATC	6 cut(s)	133, 239, 265, 652, 864, 1129
Sau96I	GGNCC	1 cut(s)	803
SchI	GAGTC	3 cut(s)	432, 701, 1086
SduI	GDGCHC	2 cut(s)	131, 146
SfaNI	GCATC	6 cut(s)	306, 379, 427, 484, 672, 775
SfcI	CTRYAG	4 cut(s)	195, 450, 636, 912
SinI	GGWCC	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
Sse9I	AATT	7 cut(s)	100, 154, 398, 687, 830, 857, 1009
SspMI	CTAG	1 cut(s)	1074
SstI	GAGCTC	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	1087
TaqI	TCGA	3 cut(s)	238, 925, 1132
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	7 cut(s)	100, 154, 398, 687, 830, 857, 1009
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	113, 185
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	3 cut(s)	307, 562, 846
TseFI	GTSAC	4 cut(s)	216, 302, 407, 742
TseI	GCWGC	5 cut(s)	67, 392, 497, 632, 666
Tsp45I	GTSAC	4 cut(s)	216, 302, 407, 742
TspDTI	ATGAA	2 cut(s)	357, 870
TspRI	CASTG	3 cut(s)	307, 562, 846
VpaK11BI	GGWCC	1 cut(s)	803
XapI	RAATTY	2 cut(s)	154, 857
XbaI	TCTAGA	1 cut(s)	1073
XceI	RCATGY	1 cut(s)	217
XmiI	GTMKAC	2 cut(s)	198, 915
XspI	CTAG	1 cut(s)	1074
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.