Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012553

Physical Location & Seq

Genomic Coordinates Reverse (-)

22440091 .. 22442051

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27150.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTGCACGGAAGAATTTAAAAAAATTAATTTAACAAGCTTTCCAACCACGCTTTCCCACAGAAGTCTGAATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAGACTACAACAACTACTACTACCATAACCAGAGGCCCCAATTTCCCACTCACTCACGTTCTCTCAGAATCTTCTCACCGGAGTCATCCAAAATTCCTATATTTTTCTTCCCTCTCTGTTTCTTACTACTTTCCGATTCTCTCAGCAACTCCGCAGCACCGCCATTAACGTTTTCATCAGAAGGAGCAAGAAGCATGTGCGTGATAGACGCAGAACAGCTCGGTCAAGAAATGGGCAACATGGAGAATAACAATAACATCGATTCCAACGACAATGACATCGAGCAGTGGTCTCTGCAAGTCGACCGGACGGAGGAGAATTTGGACCGGGAAACTCCTGCTGTGGTGAGCTCAAGTACCCAGAATATGCTCAATTCGTTTCAACTTGAAAGCATAGGTGAGGATACAGTGGTTGCAGACAGAAAGCAAAGCCTGTTCAACTTTGTTCCTGCCCTTAGGTCAGGAGAGTGGTCTGATATTGGGGGTCGAACCCATATGGAGGATACTCATTTATGCATTGGTGACTTAGCTAAGAAGTTCGGTTATAATCTACTCAGCGAGGAAGCTATCTCTTTCTACGGTATAAGTTTTTCTCGCCCTCTTCTGTTTACGACAATTCCCATCCCTAGTCAGAACTCAGAAGGGAAAATTGTTTCAGCGTACCAAGAACAAGGTCTGGTACATCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

266

Amino Acids

29.86

Weight (kDa)

4.84

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01790 FvH4_1g01790
malus_domestica	MD02G1014300.v1.1 MD15G1160600.v1.1
prunus_persica	Prupe.7G255800_v2.0.a1 Prupe.7G255800_v2.0.a1
pyrus_communis	pycom02g01310 pycom15g14450 pycom15g27150
rosa_chinensis	RchiOBHm_Chr2g0086781
rosa_laevigata	RLG00000015791
rosa_multiflora	Rmu_sc0005498.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154200
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021800 Rh2BG021600 Rh2CG022400 Rh2DG022400
rosa_wichuraiana	Rw2G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	2 cut(s)	258, 266
AclI	AACGTT	1 cut(s)	275
AcsI	RAATTY	4 cut(s)	14, 70, 198, 424
AfaI	GTAC	3 cut(s)	463, 767, 786
AfiI	CCNNNNNNNGG	2 cut(s)	418, 604
AgsI	TTSAA	3 cut(s)	488, 494, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	5 cut(s)	39, 325, 456, 635, 671
AluI	AGCT	5 cut(s)	39, 325, 456, 635, 671
Alw21I	GWGCWC	2 cut(s)	8, 458
Alw26I	GTCTC	2 cut(s)	102, 402
Alw44I	GTGCAC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	4 cut(s)	14, 70, 198, 424
AseI	ATTAAT	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	141, 430
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	4 cut(s)	174, 463, 515, 638
AvaII	GGWCC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	8
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BanII	GRGCYC	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	8, 458
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	734
BciVI	GTATCC	2 cut(s)	502, 601
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	102, 402
BfaI	CTAG	2 cut(s)	732, 796
BfuI	GTATCC	2 cut(s)	502, 601
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	141, 430
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	402
BsaWI	WCCGGW	2 cut(s)	184, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 604
Bse21I	CCTNAGG	1 cut(s)	560
BseCI	ATCGAT	1 cut(s)	366
BseGI	GGATG	2 cut(s)	191, 726
BseLI	CCNNNNNNNGG	2 cut(s)	418, 604
BseMII	CTCAG	5 cut(s)	118, 184, 262, 673, 756
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	272
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	8, 458
BsiSI	CCGG	3 cut(s)	185, 412, 433
BslI	CCNNNNNNNGG	2 cut(s)	418, 604
BsmAI	GTCTC	2 cut(s)	102, 402
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	8, 458
BspACI	CCGC	2 cut(s)	258, 266
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	5 cut(s)	117, 183, 261, 672, 755
BspDI	ATCGAT	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	514, 686
Bst6I	CTCTTC	1 cut(s)	711
BstDEI	CTNAG	8 cut(s)	104, 170, 248, 560, 631, 636, 659, 742
BstF5I	GGATG	2 cut(s)	191, 726
BstMAI	GTCTC	2 cut(s)	102, 402
BstMCI	CGRYCG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	272
Bsu15I	ATCGAT	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	560
BsuI	GTATCC	2 cut(s)	502, 601
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	191, 726
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	2 cut(s)	398, 519
Cfr13I	GGNCC	2 cut(s)	141, 430
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	462, 766, 785
CviAII	CATG	2 cut(s)	301, 346
CviJI	RGCY	7 cut(s)	39, 142, 325, 456, 537, 635, 671
CviKI_1	RGCY	7 cut(s)	39, 142, 325, 456, 537, 635, 671
CviQI	GTAC	3 cut(s)	462, 766, 785
DdeI	CTNAG	8 cut(s)	104, 170, 248, 560, 631, 636, 659, 742
DraI	TTTAAA	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	458
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	456
Eco81I	CCTNAGG	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	458
FaeI	CATG	2 cut(s)	304, 349
FatI	CATG	2 cut(s)	300, 345
FauNDI	CATATG	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	178, 713
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	732, 796
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	3 cut(s)	185, 412, 433
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	304, 349
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	4 cut(s)	174, 188, 242, 368
HpaII	CCGG	3 cut(s)	185, 412, 433
HphI	GGTGA	4 cut(s)	174, 463, 515, 638
Hpy166II	GTNNAC	3 cut(s)	6, 409, 714
Hpy188I	TCNGA	8 cut(s)	69, 107, 173, 241, 286, 580, 738, 745
Hpy188III	TCNNGA	2 cut(s)	332, 567
Hpy8I	GTNNAC	3 cut(s)	6, 409, 714
HpyAV	CCTTC	2 cut(s)	281, 740
HpyCH4III	ACNGT	2 cut(s)	514, 686
HpyCH4IV	ACGT	2 cut(s)	163, 275
HpyCH4V	TGCA	4 cut(s)	6, 403, 521, 621
HpyF3I	CTNAG	8 cut(s)	104, 170, 248, 560, 631, 636, 659, 742
HpySE526I	ACGT	2 cut(s)	163, 275
Hsp92II	CATG	2 cut(s)	304, 349
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	1 cut(s)	272
MaeI	CTAG	2 cut(s)	732, 796
MaeII	ACGT	2 cut(s)	163, 275
MaeIII	GTNAC	1 cut(s)	626
MboII	GAAGA	4 cut(s)	23, 169, 205, 698
MhlI	GDGCHC	2 cut(s)	8, 458
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	68, 396
MnlI	CCTC	8 cut(s)	85, 132, 228, 412, 499, 598, 658, 714
Mph1103I	ATGCAT	1 cut(s)	623
MseI	TTAA	4 cut(s)	18, 27, 32, 272
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	3 cut(s)	185, 412, 433
MspR9I	CCNGG	1 cut(s)	434
NciI	CCSGG	1 cut(s)	434
NdeI	CATATG	1 cut(s)	600
NlaIII	CATG	2 cut(s)	304, 349
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	626
NsiI	ATGCAT	1 cut(s)	623
NspI	RCATGY	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	174, 242, 368
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PshBI	ATTAAT	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	458
Psp1406I	AACGTT	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	2 cut(s)	141, 430
RsaI	GTAC	3 cut(s)	463, 767, 786
RsaNI	GTAC	3 cut(s)	462, 766, 785
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	458
SalI	GTCGAC	1 cut(s)	407
SaqAI	TTAA	4 cut(s)	18, 27, 32, 272
SatI	GCNGC	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	141, 430
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	2 cut(s)	8, 458
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
SsiI	CCGC	2 cut(s)	258, 266
SspMI	CTAG	2 cut(s)	732, 796
SstI	GAGCTC	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	514, 686
TaiI	ACGT	2 cut(s)	166, 278
TaqI	TCGA	4 cut(s)	366, 387, 408, 592
TaqII	GACCGA	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	174, 242, 368
Tru1I	TTAA	4 cut(s)	18, 27, 32, 272
Tru9I	TTAA	4 cut(s)	18, 27, 32, 272
TscAI	CASTG	2 cut(s)	398, 519
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	2 cut(s)	23, 431
TspRI	CASTG	2 cut(s)	398, 519
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	4 cut(s)	14, 70, 198, 424
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	2 cut(s)	732, 796
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.