Rh2DG022400

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012553
Physical Location & Seq
Reverse (-)
1285211 .. 1288304
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG022400.1

Sequence Viewer

Length: 924 bp
ATGTTACATTTTGTCCCTGCCCTTCGATCAGGAGAGTGGTCTGATATAGGAGATCGTCCCCATATGGAAGATACTCATATATGCATCAGTGACTTGGCTAAGAAGTTTGGTTATAATGTACTCAATGATGAAGCTATCTCCTTCTATGGTGTATTTGATGGTCATGGGGGAAAGGATGCAGCACAATTTGTTCGTGACAACCTGCCAAGAGTCATCGTTGAGGATGCTGACTTCCCTGTAGAGCTTGAAAAGGTGATAACAAGGTCATTTGTTGAGACAGATGCTGCATTTGCAAAAACTTGCTCACTTCAGTCTTCCCTTGCTTCTGGCACAACTGCACTCACTGCAATGATATTTGGGAGGTCTTTGCTTGTGGCGAATGCTGGAGATTGCAGGGCTATATTGTCGCGAAATGGAGCAGCTATAGAAATGTCAAAAGATCATAGACCCTGCTGCACAAAAGAAAGGATGCGAATTGAGTCTTTGGGTGGATATGTTGATGATGGTTATCTGAATGGTCAGTTAGGGGTCACCCGTGCATTAGGTGATTGGCATCTTGAAGGATTGAAGGATGAGGGTGAAAGGGGAGGACCCTTGAGTGCTGAACCGGAACTTAAATTGACAACACTGACCAAAGATGATGAATTTTTGATCATTGGTAGTGATGGAATATGGGATGTGTTCACCAACCAAAATGCTGTAGACTTTGCTCGAAGGAAACTCCAAGAGCGCAATGATGTGAAGCTGTGTTGCAAGCAAATAGTAGAGGAGGCAATAAAACGAGGCGCAACCGACAATTTGACACTTGTTATGGTGAGTTTCCACTTGGAGCCACCTCCACATCTGGTGGTAGAAAGGTCTAGAGTCAGACGTAGTATTTCTGCTGAGGGACTACAAAATCTTCAGTCCTTCTTAGATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

307

Amino Acids

34.0

Weight (kDa)

5.27

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 20 - 266 1.8e-68 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
Acc36I ACCTGC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 702
AccII CGCG 1 cut(s) 409
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 2 cut(s) 293, 887
AfaI GTAC 1 cut(s) 120
AgsI TTSAA 3 cut(s) 248, 560, 568
AluBI AGCT 4 cut(s) 134, 244, 422, 745
AluI AGCT 4 cut(s) 134, 244, 422, 745
Alw26I GTCTC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 284
ApeKI GCWGC 4 cut(s) 179, 284, 419, 453
ApoI RAATTY 1 cut(s) 644
AspLEI GCGC 2 cut(s) 732, 788
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 6 cut(s) 265, 523, 557, 590, 676, 826
AvaII GGWCC 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 4 cut(s) 191, 271, 431, 440
BccI CCATC 3 cut(s) 152, 497, 659
BclI TGATCA 1 cut(s) 651
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 861
BfmI CTRYAG 3 cut(s) 237, 423, 699
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 4 cut(s) 180, 285, 420, 454
BlsI GCNGC 4 cut(s) 181, 286, 421, 455
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 592, 831
BmsI GCATC 6 cut(s) 93, 166, 214, 271, 459, 562
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 616
Bsa29I ATCGAT 1 cut(s) 919
BsaBI GATNNNNATC 2 cut(s) 507, 552
BsaWI WCCGGW 1 cut(s) 607
Bse3DI GCAATG 2 cut(s) 354, 739
Bse8I GATNNNNATC 2 cut(s) 507, 552
BseCI ATCGAT 1 cut(s) 919
BseGI GGATG 5 cut(s) 181, 229, 474, 577, 682
BseJI GATNNNNATC 2 cut(s) 507, 552
BseMI GCAATG 2 cut(s) 354, 739
BseMII CTCAG 1 cut(s) 876
BseRI GAGGAG 1 cut(s) 782
BseXI GCAGC 4 cut(s) 191, 271, 431, 440
BsgI GTGCAG 2 cut(s) 321, 439
Bsh1236I CGCG 1 cut(s) 409
BshVI ATCGAT 1 cut(s) 919
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 2 cut(s) 42, 903
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 42, 903
BsmI GAATGC 1 cut(s) 385
Bsp143I GATC 5 cut(s) 26, 52, 439, 651, 916
Bsp68I TCGCGA 1 cut(s) 409
BspCNI CTCAG 1 cut(s) 877
BspDI ATCGAT 1 cut(s) 919
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 592, 831
BspMI ACCTGC 1 cut(s) 210
BsrDI GCAATG 2 cut(s) 354, 739
BssMI GATC 5 cut(s) 26, 52, 439, 651, 916
BstAPI GCANNNNNTGC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 755
BstDEI CTNAG 3 cut(s) 99, 885, 913
BstEII GGTNACC 1 cut(s) 529
BstF5I GGATG 5 cut(s) 181, 229, 474, 577, 682
BstFNI CGCG 1 cut(s) 409
BstHHI GCGC 2 cut(s) 732, 788
BstKTI GATC 5 cut(s) 29, 55, 442, 654, 919
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 5 cut(s) 26, 52, 439, 651, 916
BstMWI GCNNNNNNNGC 2 cut(s) 290, 344
BstPI GGTNACC 1 cut(s) 529
BstSFI CTRYAG 3 cut(s) 237, 423, 699
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 4 cut(s) 191, 271, 431, 440
BstV2I GAAGAC 1 cut(s) 306
Bsu15I ATCGAT 1 cut(s) 919
BsuTUI ATCGAT 1 cut(s) 919
BtsCI GGATG 5 cut(s) 181, 229, 474, 577, 682
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 94, 342, 626
BtuMI TCGCGA 1 cut(s) 409
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 755
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 2 cut(s) 732, 788
Cfr13I GGNCC 1 cut(s) 590
ClaI ATCGAT 1 cut(s) 919
Csp6I GTAC 1 cut(s) 119
CviAII CATG 1 cut(s) 164
CviJI RGCY 7 cut(s) 98, 134, 244, 398, 422, 745, 832
CviKI_1 RGCY 7 cut(s) 98, 134, 244, 398, 422, 745, 832
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 3 cut(s) 99, 885, 913
DpnI GATC 5 cut(s) 28, 54, 441, 653, 918
DpnII GATC 5 cut(s) 26, 52, 439, 651, 916
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 2 cut(s) 293, 887
Eco91I GGTNACC 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 86
FaeI CATG 1 cut(s) 167
FaqI GGGAC 2 cut(s) 42, 903
FatI CATG 1 cut(s) 163
FauNDI CATATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 651
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 4 cut(s) 180, 285, 420, 454
FokI GGATG 5 cut(s) 188, 236, 481, 584, 689
Fsp4HI GCNGC 4 cut(s) 180, 285, 420, 454
FspBI CTAG 1 cut(s) 861
GlaI GCGC 2 cut(s) 731, 787
GluI GCNGC 4 cut(s) 180, 285, 420, 454
GsuI CTGGAG 1 cut(s) 405
HapII CCGG 1 cut(s) 608
HhaI GCGC 2 cut(s) 732, 788
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 2 cut(s) 730, 786
HinP1I GCGC 2 cut(s) 730, 786
HinfI GANTC 3 cut(s) 210, 479, 864
HpaII CCGG 1 cut(s) 608
HphI GGTGA 6 cut(s) 265, 523, 557, 590, 676, 826
Hpy166II GTNNAC 2 cut(s) 684, 703
Hpy188I TCNGA 3 cut(s) 43, 513, 869
Hpy188III TCNNGA 5 cut(s) 30, 194, 408, 557, 861
Hpy8I GTNNAC 2 cut(s) 684, 703
HpyAV CCTTC 6 cut(s) 32, 151, 554, 562, 708, 919
HpyCH4IV ACGT 1 cut(s) 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 344
HpyF3I CTNAG 3 cut(s) 99, 885, 913
HpySE526I ACGT 1 cut(s) 871
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 2 cut(s) 730, 786
Ksp22I TGATCA 1 cut(s) 651
Kzo9I GATC 5 cut(s) 26, 52, 439, 651, 916
LmnI GCTCC 2 cut(s) 416, 829
Lsp1109I GCAGC 4 cut(s) 191, 271, 431, 440
LweI GCATC 6 cut(s) 93, 166, 214, 271, 459, 562
MaeI CTAG 1 cut(s) 861
MaeII ACGT 1 cut(s) 871
MaeIII GTNAC 4 cut(s) 3, 89, 194, 529
MalI GATC 5 cut(s) 28, 54, 441, 653, 918
MboI GATC 5 cut(s) 26, 52, 439, 651, 916
MboII GAAGA 3 cut(s) 80, 306, 893
MluCI AATT 5 cut(s) 185, 474, 617, 644, 796
MlyI GAGTC 3 cut(s) 219, 488, 873
MnlI CCTC 9 cut(s) 214, 354, 568, 581, 760, 763, 776, 846, 880
Mph1103I ATGCAT 1 cut(s) 86
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 385
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 290, 344
NdeI CATATG 1 cut(s) 63
NdeII GATC 5 cut(s) 26, 52, 439, 651, 916
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 2 cut(s) 592, 831
NmuCI GTSAC 3 cut(s) 89, 194, 529
NruI TCGCGA 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 86
PctI GAATGC 1 cut(s) 385
PkrI GCNGC 4 cut(s) 181, 286, 421, 455
PleI GAGTC 3 cut(s) 218, 487, 872
PpsI GAGTC 3 cut(s) 218, 487, 872
PpuMI RGGWCCY 1 cut(s) 590
PsiI TTATAA 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 590
PspEI GGTNACC 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 592, 831
PspPI GGNCC 1 cut(s) 590
PspPPI RGGWCCY 1 cut(s) 590
PstNI CAGNNNCTG 1 cut(s) 284
RruI TCGCGA 1 cut(s) 409
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 4 cut(s) 180, 285, 420, 454
Sau3AI GATC 5 cut(s) 26, 52, 439, 651, 916
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 3 cut(s) 219, 488, 873
SfaNI GCATC 6 cut(s) 93, 166, 214, 271, 459, 562
SfcI CTRYAG 3 cut(s) 237, 423, 699
SinI GGWCC 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 5 cut(s) 185, 474, 617, 644, 796
SspMI CTAG 1 cut(s) 861
TaiI ACGT 1 cut(s) 874
TaqI TCGA 3 cut(s) 25, 712, 919
TasI AATT 5 cut(s) 185, 474, 617, 644, 796
TatI WGTACW 1 cut(s) 118
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 3 cut(s) 94, 349, 633
TseFI GTSAC 3 cut(s) 89, 194, 529
TseI GCWGC 4 cut(s) 179, 284, 419, 453
Tsp45I GTSAC 3 cut(s) 89, 194, 529
TspDTI ATGAA 2 cut(s) 144, 657
TspRI CASTG 3 cut(s) 94, 349, 633
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 644
XbaI TCTAGA 1 cut(s) 860
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 1 cut(s) 861
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.