RLG00000009287

Uncharacterized protein At4g22758-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0020000
Physical Location & Seq
Reverse (-)
50256079 .. 50257105
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009287

Sequence Viewer

Length: 669 bp
ATGGAGAACGCAGTGGTGATGATGGACTTGCAGGGGTTGCCGAAAGGCTGCATAGCCAACGTGATGTCAGTGACGACTCCTCAAGACGCGTGCAGACTATGGTTGATTTCGAGGAATTTCAAGTTGGCGGCGGACTCCGACGTCGTTTGGGTCAAGTTCCTTCCGCATGAGACCAATGAGATCCTATCCCACTTCGAATCTGCAATCCACGCCAAATCCAAGAAGGAGCTTTACTTCATTCTCTCTCACAACCCCATCCTCATCGACGATAGCAAGATCGGAATTGCGATTTGTAAATTCGGATTGGAATTTTTTGTTGGTATTGATTTGATTCGAAGATGTTGCTCTACAAGCAGAAGAAGAGTCCCAAGGGCAACAGGGTTCTTGATCATCATTACTGTGTTGGGCAGTGCAGGCCCGATCCCATTTGTCGTCAACGAGGAGATGCTTGTCGCTGTGGTCATCGATACGGCCTTGAAATCCTATGCTCCTAAAGGTCGCCTTCCGATTCTCGGCTCTAATCTCAATGAGTTCATGCTCTACTGCCCCACTGCTGGACCTGATACTTTGAGTCCATGGGACACAATTGGATCGCAAGGAACTCGGAGCTTACGGAGGAGAGAGAGAGAGTTGAAGTTAGTGGATGGGAATGAACTGGGAGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.57

Weight (kDa)

8.22

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7054 PF23156 127 - 203 2.5e-19 Domain of unknown function (DUF7054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020000)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006348 RLG00000009287 RLG00000011184
rosa_multiflora Rmu_sc0000058.1_g000008 Rmu_sc0003382.1_g000029 Rmu_sc0004790.1_g000002
rosa_samantha Rh7AG377000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 1 cut(s) 144
AccII CGCG 1 cut(s) 89
AciI CCGC 3 cut(s) 128, 131, 164
AclWI GGATC 3 cut(s) 175, 415, 598
AcsI RAATTY 3 cut(s) 115, 296, 308
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 512, 554
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 3 cut(s) 121, 478, 634
AjuI GAANNNNNNNTTGG 4 cut(s) 107, 139, 300, 332
AluBI AGCT 2 cut(s) 229, 609
AluI AGCT 2 cut(s) 229, 609
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 3 cut(s) 175, 415, 598
AoxI GGCC 2 cut(s) 415, 471
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 3 cut(s) 115, 296, 308
AspS9I GGNCC 2 cut(s) 416, 557
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 2 cut(s) 195, 334
AvaII GGWCC 1 cut(s) 557
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbvI GCAGC 1 cut(s) 35
BccI CCATC 3 cut(s) 16, 263, 638
BceAI ACGGC 1 cut(s) 486
BcgI CGANNNNNNTGC 4 cut(s) 324, 358, 584, 618
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 2 cut(s) 49, 129
BlsI GCNGC 2 cut(s) 50, 130
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 416, 557
BmrI ACTGGG 1 cut(s) 665
BmsI GCATC 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 665
Bpu14I TTCGAA 2 cut(s) 195, 334
BpuEI CTTGAG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 368, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 554
Bse1I ACTGG 1 cut(s) 660
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 2 cut(s) 368, 575
BseGI GGATG 2 cut(s) 255, 649
BseLI CCNNNNNNNGG 2 cut(s) 512, 554
BseNI ACTGG 1 cut(s) 660
BseRI GAGGAG 3 cut(s) 69, 455, 631
BseXI GCAGC 1 cut(s) 35
BsgI GTGCAG 2 cut(s) 112, 432
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 417, 473
BshVI ATCGAT 1 cut(s) 465
BslFI GGGAC 2 cut(s) 350, 593
BslI CCNNNNNNNGG 2 cut(s) 512, 554
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 350, 593
BsnI GGCC 2 cut(s) 417, 473
Bso31I GGTCTC 1 cut(s) 164
Bsp119I TTCGAA 2 cut(s) 195, 334
Bsp143I GATC 5 cut(s) 180, 276, 387, 420, 590
Bsp19I CCATGG 1 cut(s) 575
BspACI CCGC 3 cut(s) 128, 131, 164
BspANI GGCC 2 cut(s) 417, 473
BspDI ATCGAT 1 cut(s) 465
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 3 cut(s) 175, 415, 598
BspT104I TTCGAA 2 cut(s) 195, 334
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 660
BssECI CCNNGG 2 cut(s) 368, 575
BssMI GATC 5 cut(s) 180, 276, 387, 420, 590
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 368, 575
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 355
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 37
BstBI TTCGAA 2 cut(s) 195, 334
BstC8I GCNNGC 2 cut(s) 91, 415
BstDSI CCRYGG 1 cut(s) 575
BstF5I GGATG 2 cut(s) 255, 649
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 5 cut(s) 183, 279, 390, 423, 593
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 5 cut(s) 180, 276, 387, 420, 590
BstMWI GCNNNNNNNGC 4 cut(s) 37, 209, 351, 414
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 2 cut(s) 417, 473
BsuTUI ATCGAT 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 575
BtsCI GGATG 2 cut(s) 255, 649
BtsI GCAGTG 3 cut(s) 18, 415, 549
BtsIMutI CAGTG 4 cut(s) 18, 75, 415, 549
Cac8I GCNNGC 2 cut(s) 91, 415
Cfr13I GGNCC 2 cut(s) 416, 557
ClaI ATCGAT 1 cut(s) 465
CseI GACGC 1 cut(s) 95
CviAII CATG 3 cut(s) 167, 535, 576
CviJI RGCY 7 cut(s) 48, 56, 229, 417, 473, 516, 609
CviKI_1 RGCY 7 cut(s) 48, 56, 229, 417, 473, 516, 609
DpnI GATC 5 cut(s) 182, 278, 389, 422, 592
DpnII GATC 5 cut(s) 180, 276, 387, 420, 590
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 368, 575
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 557
EcoT14I CCWWGG 2 cut(s) 368, 575
ErhI CCWWGG 2 cut(s) 368, 575
FaeI CATG 3 cut(s) 170, 538, 579
FaiI YATR 6 cut(s) 53, 100, 168, 486, 536, 577
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 2 cut(s) 350, 593
FatI CATG 3 cut(s) 166, 534, 575
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 49, 129
FokI GGATG 2 cut(s) 242, 656
Fsp4HI GCNGC 2 cut(s) 49, 129
GluI GCNGC 2 cut(s) 49, 129
HaeIII GGCC 2 cut(s) 417, 473
HgaI GACGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 3 cut(s) 170, 538, 579
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 7 cut(s) 76, 134, 197, 331, 363, 508, 571
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 5 cut(s) 139, 281, 302, 507, 606
Hpy188III TCNNGA 2 cut(s) 83, 385
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 3 cut(s) 143, 146, 269
HpyAV CCTTC 3 cut(s) 170, 217, 512
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 60, 141
HpyCH4V TGCA 5 cut(s) 31, 51, 93, 203, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 209, 351, 414
HpySE526I ACGT 2 cut(s) 60, 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 3 cut(s) 170, 538, 579
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 5 cut(s) 180, 276, 387, 420, 590
LmnI GCTCC 3 cut(s) 226, 493, 606
LpnPI CCDG 6 cut(s) 17, 363, 399, 540, 573, 641
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 435
MaeII ACGT 2 cut(s) 60, 141
MaeIII GTNAC 1 cut(s) 70
MalI GATC 5 cut(s) 182, 278, 389, 422, 592
MboI GATC 5 cut(s) 180, 276, 387, 420, 590
MboII GAAGA 3 cut(s) 348, 369, 372
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 180
MluCI AATT 6 cut(s) 115, 282, 296, 308, 585, 664
MluI ACGCGT 1 cut(s) 87
MlyI GAGTC 4 cut(s) 70, 128, 372, 580
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 6 cut(s) 90, 105, 269, 433, 609, 653
MseI TTAA 1 cut(s) 667
MslI CAYNNNNRTG 1 cut(s) 398
MunI CAATTG 1 cut(s) 585
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 37, 209, 351, 414
NcoI CCATGG 1 cut(s) 575
NdeII GATC 5 cut(s) 180, 276, 387, 420, 590
NlaIII CATG 3 cut(s) 170, 538, 579
NmeAIII GCCGAG 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 70
NspV TTCGAA 2 cut(s) 195, 334
PfeI GAWTC 3 cut(s) 197, 331, 508
PkrI GCNGC 2 cut(s) 50, 130
PleI GAGTC 4 cut(s) 70, 128, 371, 579
PpsI GAGTC 4 cut(s) 70, 128, 371, 579
PspPI GGNCC 2 cut(s) 416, 557
PsuI RGATCY 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 1 cut(s) 667
SatI GCNGC 2 cut(s) 49, 129
Sau3AI GATC 5 cut(s) 180, 276, 387, 420, 590
Sau96I GGNCC 2 cut(s) 416, 557
SchI GAGTC 4 cut(s) 70, 128, 372, 580
SetI ASST 6 cut(s) 63, 144, 231, 499, 562, 611
SfaNI GCATC 1 cut(s) 435
SfuI TTCGAA 2 cut(s) 195, 334
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 6 cut(s) 115, 282, 296, 308, 585, 664
SsiI CCGC 3 cut(s) 128, 131, 164
StyI CCWWGG 2 cut(s) 368, 575
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 2 cut(s) 63, 144
TaqI TCGA 5 cut(s) 110, 195, 264, 334, 465
TasI AATT 6 cut(s) 115, 282, 296, 308, 585, 664
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 3 cut(s) 197, 331, 508
Tru1I TTAA 1 cut(s) 667
Tru9I TTAA 1 cut(s) 667
TscAI CASTG 4 cut(s) 18, 75, 415, 556
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 226, 523, 666
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 4 cut(s) 18, 75, 415, 556
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 3 cut(s) 115, 296, 308
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.