Rmu_sc0004790.1_g000002

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004790.1
OG0020000
Physical Location & Seq
Forward (+)
3897 .. 7362
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004790.1_g000002.1.cds

Sequence Viewer

Length: 690 bp
atggagaatacagcggtgatgatggacttgcaggcattgccggaaggctgcatagccagcgtgatctcactgatgactcctcgagacgtgtgcagattatcgttgatttggaagaatttcaaattggtggcggactccgacgccatttgggtcaagttccttccacatgagaccagtgagatcctatcccactctgaatccacaatccacgccaaattcaaaaaggagctttacttcactctctctcacaaccccatcctcatcgacgatagcaagatggagatgcttgtcgccgcggtcatcgataccgccttgaaatcctatgctcctaaaggtcgccttccgattctcggctctgatctcaatgagttcatgctctactgtcccactgctggacctgatgtgattgctctgctcaacctacaacgttgggtatcgattcggtgtcgcgaagagatcacaaccaaaactcttatccgtaaggcaagaagtccttttccgaaaggcataaagaagaacctggtgacgaggttggtgctctcctcgtccacggcgtttaatcaagaagtcaggtcaagggattctcttacgactgcaccccacagtgctgacacgcctgcgcacacgctcaaaagagacagtttgcacccatactggttttggagccaaacacaagcatcaattgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

229

Amino Acids

25.81

Weight (kDa)

8.87

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020000)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006348 RLG00000009287 RLG00000011184
rosa_multiflora Rmu_sc0000058.1_g000008 Rmu_sc0003382.1_g000029 Rmu_sc0004790.1_g000002
rosa_samantha Rh7AG377000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 621
AccII CGCG 2 cut(s) 296, 450
AciI CCGC 5 cut(s) 14, 131, 294, 296, 309
AclI AACGTT 1 cut(s) 427
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 2 cut(s) 115, 215
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 350, 392
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 3 cut(s) 121, 220, 316
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 519
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 3 cut(s) 78, 164, 630
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 2 cut(s) 115, 215
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 28, 535
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 35
BccI CCATC 3 cut(s) 16, 263, 271
BceAI ACGGC 1 cut(s) 567
BcgI CGANNNNNNTGC 4 cut(s) 72, 106, 517, 551
BciT130I CCWGG 1 cut(s) 521
BcoDI GTCTC 3 cut(s) 78, 164, 630
BisI GCNGC 2 cut(s) 49, 294
BlsI GCNGC 2 cut(s) 50, 295
Bme1390I CCNGG 1 cut(s) 521
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 2 cut(s) 273, 686
Bsa29I ATCGAT 2 cut(s) 303, 437
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 294, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 392
Bse1I ACTGG 2 cut(s) 174, 659
Bse3DI GCAATG 1 cut(s) 35
BseBI CCWGG 1 cut(s) 521
BseCI ATCGAT 2 cut(s) 303, 437
BseDI CCNNGG 2 cut(s) 294, 549
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 350, 392
BseMI GCAATG 1 cut(s) 35
BseNI ACTGG 2 cut(s) 174, 659
BseRI GAGGAG 2 cut(s) 69, 532
BseXI GCAGC 1 cut(s) 35
BsgI GTGCAG 2 cut(s) 112, 579
Bsh1236I CGCG 2 cut(s) 296, 450
BshVI ATCGAT 2 cut(s) 303, 437
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 350, 392
BsmAI GTCTC 3 cut(s) 78, 164, 630
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 369
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 4 cut(s) 63, 180, 358, 456
Bsp68I TCGCGA 1 cut(s) 450
BspACI CCGC 5 cut(s) 14, 131, 294, 296, 309
BspDI ATCGAT 2 cut(s) 303, 437
BspFNI CGCG 2 cut(s) 296, 450
BspLI GGNNCC 1 cut(s) 665
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 2 cut(s) 174, 659
BssECI CCNNGG 2 cut(s) 294, 549
BssMI GATC 4 cut(s) 63, 180, 358, 456
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 3 cut(s) 383, 605, 641
Bst6I CTCTTC 1 cut(s) 447
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 3 cut(s) 33, 58, 618
BstDSI CCRYGG 2 cut(s) 294, 549
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 296, 450
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 4 cut(s) 66, 183, 361, 459
BstMAI GTCTC 3 cut(s) 78, 164, 630
BstMBI GATC 4 cut(s) 63, 180, 358, 456
BstMWI GCNNNNNNNGC 2 cut(s) 37, 57
BstNI CCWGG 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 519
BstUI CGCG 2 cut(s) 296, 450
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
Bsu15I ATCGAT 2 cut(s) 303, 437
BsuTUI ATCGAT 2 cut(s) 303, 437
BtgI CCRYGG 2 cut(s) 294, 549
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 4 cut(s) 68, 181, 387, 610
BtuMI TCGCGA 1 cut(s) 450
Cac8I GCNNGC 3 cut(s) 33, 58, 618
CfoI GCGC 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 395
Cfr42I CCGCGG 1 cut(s) 297
ClaI ATCGAT 2 cut(s) 303, 437
CseI GACGC 1 cut(s) 149
CsiI ACCWGGT 1 cut(s) 519
CviAII CATG 2 cut(s) 167, 373
CviJI RGCY 5 cut(s) 48, 56, 229, 354, 666
CviKI_1 RGCY 5 cut(s) 48, 56, 229, 354, 666
DpnI GATC 4 cut(s) 65, 182, 360, 458
DpnII GATC 4 cut(s) 63, 180, 358, 456
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 519
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 2 cut(s) 170, 376
FaiI YATR 6 cut(s) 53, 168, 324, 374, 509, 652
FalI AAGNNNNNCTT 4 cut(s) 324, 356, 478, 510
FaqI GGGAC 1 cut(s) 369
FatI CATG 2 cut(s) 166, 372
Fnu4HI GCNGC 2 cut(s) 49, 294
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 49, 294
FspI TGCGCA 1 cut(s) 621
GlaI GCGC 1 cut(s) 621
GluI GCNGC 2 cut(s) 49, 294
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 622
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 170, 376
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HinfI GANTC 6 cut(s) 76, 134, 197, 346, 439, 581
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 28, 535
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 5 cut(s) 139, 196, 345, 358, 501
Hpy188III TCNNGA 3 cut(s) 83, 449, 563
Hpy8I GTNNAC 1 cut(s) 549
Hpy99I CGWCG 2 cut(s) 143, 269
HpyAV CCTTC 3 cut(s) 38, 170, 350
HpyCH4III ACNGT 3 cut(s) 383, 605, 641
HpyCH4IV ACGT 2 cut(s) 87, 427
HpyCH4V TGCA 5 cut(s) 31, 51, 93, 596, 646
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 57
HpySE526I ACGT 2 cut(s) 87, 427
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 2 cut(s) 170, 376
HspAI GCGC 1 cut(s) 620
KspI CCGCGG 1 cut(s) 297
Kzo9I GATC 4 cut(s) 63, 180, 358, 456
LmnI GCTCC 3 cut(s) 226, 331, 663
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 273, 686
MabI ACCWGGT 1 cut(s) 519
MaeII ACGT 2 cut(s) 87, 427
MaeIII GTNAC 1 cut(s) 523
MalI GATC 4 cut(s) 65, 182, 360, 458
MboI GATC 4 cut(s) 63, 180, 358, 456
MboII GAAGA 3 cut(s) 124, 464, 526
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 4 cut(s) 115, 122, 215, 681
MlyI GAGTC 2 cut(s) 70, 128
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 4 cut(s) 90, 269, 522, 553
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 558
MspA1I CMGCKG 2 cut(s) 14, 296
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 521
MunI CAATTG 1 cut(s) 681
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 2 cut(s) 296, 450
MwoI GCNNNNNNNGC 2 cut(s) 37, 57
NdeII GATC 4 cut(s) 63, 180, 358, 456
NlaIII CATG 2 cut(s) 170, 376
NlaIV GGNNCC 1 cut(s) 665
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 523
NruI TCGCGA 1 cut(s) 450
NsbI TGCGCA 1 cut(s) 621
PaeR7I CTCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 551
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 4 cut(s) 197, 346, 439, 581
PkrI GCNGC 2 cut(s) 50, 295
PleI GAGTC 2 cut(s) 70, 128
PpsI GAGTC 2 cut(s) 70, 128
Psp1406I AACGTT 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 1 cut(s) 395
PsuI RGATCY 1 cut(s) 180
RruI TCGCGA 1 cut(s) 450
SacII CCGCGG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 2 cut(s) 49, 294
Sau3AI GATC 4 cut(s) 63, 180, 358, 456
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 2 cut(s) 70, 128
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 1 cut(s) 540
SetI ASST 9 cut(s) 90, 231, 337, 400, 423, 430, 522, 533, 575
SexAI ACCWGGT 1 cut(s) 519
SfaNI GCATC 2 cut(s) 273, 686
Sfr274I CTCGAG 1 cut(s) 81
Sfr303I CCGCGG 1 cut(s) 297
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 4 cut(s) 115, 122, 215, 681
SsiI CCGC 5 cut(s) 14, 131, 294, 296, 309
StyD4I CCNGG 1 cut(s) 519
TaaI ACNGT 3 cut(s) 383, 605, 641
TaiI ACGT 2 cut(s) 90, 430
TaqI TCGA 4 cut(s) 82, 264, 303, 437
TasI AATT 4 cut(s) 115, 122, 215, 681
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 4 cut(s) 197, 346, 439, 581
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 4 cut(s) 75, 181, 394, 610
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 4 cut(s) 75, 181, 394, 610
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 2 cut(s) 115, 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 657
XhoI CTCGAG 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.