Rmu_sc0000058.1_g000008

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000058.1
OG0020000
Physical Location & Seq
Reverse (-)
41028 .. 41840
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000058.1_g000008.1.cds

Sequence Viewer

Length: 456 bp
atggagaatgcagcggtgatgatggacttgcaggcattgccggaaggctgcatagccagcgtgatctcactgatgactcctcgagacgtgtgcagactatcgttgatttggaagaatttcaagtcagtggcggactcctacgccgtttgggtcaagttccttccgcatgagaccagtgagattctatcccactccgaatccataatccacgccaaatccaaaaaggagctttacttcactctctctcacaaccccatcgtcatcgacgatagcaagatggagatgcttgtcgctgcggtcatcgataccgccttgaaatcctatgctcctaaaggtcgccttccgatactcggctctgatctcaatgagttcctgctctactgtcccactgctggacctgatggtaatatctccatagtcccttttatcactttcaaatctcttcctgaattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

151

Amino Acids

16.75

Weight (kDa)

5.5

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020000)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006348 RLG00000009287 RLG00000011184
rosa_multiflora Rmu_sc0000058.1_g000008 Rmu_sc0003382.1_g000029 Rmu_sc0004790.1_g000002
rosa_samantha Rh7AG377000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 14, 131, 164, 296, 309
AcsI RAATTY 2 cut(s) 115, 449
AfiI CCNNNNNNNGG 2 cut(s) 350, 392
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 3 cut(s) 121, 316, 436
AjiI CACGTC 1 cut(s) 88
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 2 cut(s) 78, 164
Ama87I CYCGRG 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 11, 48, 293
ApoI RAATTY 2 cut(s) 115, 449
Asp700I GAANNNNTTC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 395
BbvI GCAGC 3 cut(s) 23, 35, 280
BccI CCATC 4 cut(s) 16, 263, 271, 395
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BcoDI GTCTC 2 cut(s) 78, 164
BisI GCNGC 3 cut(s) 12, 49, 294
BlsI GCNGC 3 cut(s) 13, 50, 295
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 395
BmsI GCATC 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 392
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 350, 392
BseMI GCAATG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 23, 35, 280
BsgI GTGCAG 1 cut(s) 112
BshVI ATCGAT 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 369, 404
BslI CCNNNNNNNGG 2 cut(s) 350, 392
BsmAI GTCTC 2 cut(s) 78, 164
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 369, 404
BsmI GAATGC 1 cut(s) 13
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 81
Bsp143I GATC 2 cut(s) 63, 358
BspACI CCGC 5 cut(s) 14, 131, 164, 296, 309
BspDI ATCGAT 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 174
BssMI GATC 2 cut(s) 63, 358
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 33, 58
BstKTI GATC 2 cut(s) 66, 361
BstMAI GTCTC 2 cut(s) 78, 164
BstMBI GATC 2 cut(s) 63, 358
BstMWI GCNNNNNNNGC 2 cut(s) 37, 57
BstV1I GCAGC 3 cut(s) 23, 35, 280
Bsu15I ATCGAT 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 303
BtrI CACGTC 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 4 cut(s) 68, 132, 181, 387
Cac8I GCNNGC 2 cut(s) 33, 58
Cfr13I GGNCC 1 cut(s) 395
ClaI ATCGAT 1 cut(s) 303
CviAII CATG 1 cut(s) 167
CviJI RGCY 4 cut(s) 48, 56, 229, 354
CviKI_1 RGCY 4 cut(s) 48, 56, 229, 354
DpnI GATC 2 cut(s) 65, 360
DpnII GATC 2 cut(s) 63, 358
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 1 cut(s) 170
FaiI YATR 5 cut(s) 53, 168, 203, 324, 416
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 2 cut(s) 369, 404
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 12, 49, 294
Fsp4HI GCNGC 3 cut(s) 12, 49, 294
GluI GCNGC 3 cut(s) 12, 49, 294
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 170
HinfI GANTC 4 cut(s) 76, 134, 181, 197
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 196, 345, 358
Hpy188III TCNNGA 2 cut(s) 83, 446
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 38, 170, 350
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 4 cut(s) 11, 31, 51, 93
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 57
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 2 cut(s) 63, 358
LmnI GCTCC 2 cut(s) 226, 331
LpnPI CCDG 7 cut(s) 17, 54, 70, 187, 378, 386, 411
Lsp1109I GCAGC 3 cut(s) 23, 35, 280
LweI GCATC 1 cut(s) 273
MaeII ACGT 1 cut(s) 87
MalI GATC 2 cut(s) 65, 360
MboI GATC 2 cut(s) 63, 358
MboII GAAGA 2 cut(s) 124, 434
MluCI AATT 2 cut(s) 115, 449
MlyI GAGTC 2 cut(s) 70, 128
MnlI CCTC 1 cut(s) 90
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 454
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 37, 57
NdeII GATC 2 cut(s) 63, 358
NlaIII CATG 1 cut(s) 170
NmeAIII GCCGAG 1 cut(s) 330
PaeR7I CTCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 181, 197
PkrI GCNGC 3 cut(s) 13, 50, 295
PleI GAGTC 2 cut(s) 70, 128
PpsI GAGTC 2 cut(s) 70, 128
PspPI GGNCC 1 cut(s) 395
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 3 cut(s) 12, 49, 294
Sau3AI GATC 2 cut(s) 63, 358
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 2 cut(s) 70, 128
SetI ASST 4 cut(s) 90, 231, 337, 400
SfaNI GCATC 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 2 cut(s) 115, 449
SsiI CCGC 5 cut(s) 14, 131, 164, 296, 309
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 82, 264, 303
TasI AATT 2 cut(s) 115, 449
TfiI GAWTC 2 cut(s) 181, 197
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TscAI CASTG 4 cut(s) 75, 132, 181, 394
TseI GCWGC 3 cut(s) 11, 48, 293
TspRI CASTG 4 cut(s) 75, 132, 181, 394
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 2 cut(s) 115, 449
XhoI CTCGAG 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.