RLG00000011184

Uncharacterized protein At4g22758-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0020000
Physical Location & Seq
Forward (+)
7441360 .. 7442347
988 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011184

Sequence Viewer

Length: 522 bp
ATGGAGAACGCAGCGACTATCGTTGATTTCGAGGAATTTCACGACGCCATTTGGGTTAAGTTCCTTCCGCATGAGACCAATGAGATCCTATCCCACTCCGAATCTGCAATCCACGCCAAATCAAAGAAGAAGCTTTACTTCACTCTCTCTCACAACCCCATCCTCATCGACGATAGCAGGATGGGAATTGCGATTTGTAAATTCAGATTGGAATTTTTTGTTGGTATTGATTTGATTCGAAGATGTTGTTCTACAAGCAGAAGAAGAGTCCCAAGGGCAACAGGGTTCTTGACCATCATTATTGTGCTAGGTAGTGCCGGCCCGATCCGATTTGTCATCAACGAGGAGATGCTTGTCGCTGCGGTCATCGATACCGCCTTGAAATCCTATGCTCCTAAAGGTCGCCTTCTGATTCTCGGCTCTGATCTCAATGAGTTCATGCTCTACTGCCCCACTGCTGGACTTGATGGTAATATCTCCATAGTCTCTTTTATCACTTTCGAATCTCTTCCTGAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.41

Weight (kDa)

6.2

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7054 PF23156 96 - 156 1.8e-13 Domain of unknown function (DUF7054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020000)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006348 RLG00000009287 RLG00000011184
rosa_multiflora Rmu_sc0000058.1_g000008 Rmu_sc0003382.1_g000029 Rmu_sc0004790.1_g000002
rosa_samantha Rh7AG377000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 68, 362, 375
AclWI GGATC 2 cut(s) 79, 319
AcsI RAATTY 4 cut(s) 35, 200, 212, 515
AcyI GRCGYC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 458
AgsI TTSAA 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 68, 490
AlwI GGATC 2 cut(s) 79, 319
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 2 cut(s) 11, 359
ApoI RAATTY 4 cut(s) 35, 200, 212, 515
Asp700I GAANNNNTTC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 320
AsuII TTCGAA 2 cut(s) 238, 501
BarI GAAGNNNNNNTAC 2 cut(s) 119, 151
BbvI GCAGC 2 cut(s) 23, 346
BccI CCATC 4 cut(s) 167, 175, 302, 461
BcoDI GTCTC 2 cut(s) 68, 490
BfaI CTAG 1 cut(s) 308
BisI GCNGC 2 cut(s) 12, 360
BlsI GCNGC 2 cut(s) 13, 361
BmgT120I GGNCC 1 cut(s) 320
BmsI GCATC 1 cut(s) 339
Bpu14I TTCGAA 2 cut(s) 238, 501
Bsa29I ATCGAT 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse118I RCCGGY 1 cut(s) 317
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 159, 186
BseLI CCNNNNNNNGG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 2 cut(s) 23, 346
BshFI GGCC 1 cut(s) 321
BshVI ATCGAT 1 cut(s) 369
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 2 cut(s) 68, 490
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 68
Bsp119I TTCGAA 2 cut(s) 238, 501
Bsp143I GATC 3 cut(s) 84, 324, 424
BspACI CCGC 3 cut(s) 68, 362, 375
BspANI GGCC 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 369
BspPI GGATC 2 cut(s) 79, 319
BspT104I TTCGAA 2 cut(s) 238, 501
BspTNI GGTCTC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 317
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 3 cut(s) 84, 324, 424
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 272
Bst6I CTCTTC 2 cut(s) 259, 513
BstACI GRCGYC 1 cut(s) 45
BstBI TTCGAA 2 cut(s) 238, 501
BstC8I GCNNGC 1 cut(s) 319
BstF5I GGATG 2 cut(s) 159, 186
BstKTI GATC 3 cut(s) 87, 327, 427
BstMAI GTCTC 2 cut(s) 68, 490
BstMBI GATC 3 cut(s) 84, 324, 424
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 23, 346
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
Bsu15I ATCGAT 1 cut(s) 369
BsuRI GGCC 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 369
BtsCI GGATG 2 cut(s) 159, 186
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 320
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 1 cut(s) 53
CviAII CATG 2 cut(s) 71, 439
CviJI RGCY 3 cut(s) 133, 321, 420
CviKI_1 RGCY 3 cut(s) 133, 321, 420
DpnI GATC 3 cut(s) 86, 326, 426
DpnII GATC 3 cut(s) 84, 324, 424
Eam1104I CTCTTC 2 cut(s) 259, 513
EarI CTCTTC 2 cut(s) 259, 513
Eco130I CCWWGG 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 2 cut(s) 74, 442
FaiI YATR 4 cut(s) 72, 390, 440, 482
FalI AAGNNNNNCTT 4 cut(s) 122, 154, 390, 422
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 70, 438
Fnu4HI GCNGC 2 cut(s) 12, 360
FokI GGATG 2 cut(s) 146, 193
Fsp4HI GCNGC 2 cut(s) 12, 360
FspBI CTAG 1 cut(s) 308
GluI GCNGC 2 cut(s) 12, 360
HaeIII GGCC 1 cut(s) 321
HapII CCGG 1 cut(s) 318
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 74, 442
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 5 cut(s) 101, 235, 267, 412, 503
HpaII CCGG 1 cut(s) 318
Hpy188I TCNGA 5 cut(s) 100, 206, 329, 411, 424
Hpy188III TCNNGA 3 cut(s) 41, 289, 512
Hpy99I CGWCG 2 cut(s) 47, 173
HpyAV CCTTC 2 cut(s) 74, 416
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 74, 442
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Kzo9I GATC 3 cut(s) 84, 324, 424
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 4 cut(s) 163, 267, 331, 444
Lsp1109I GCAGC 2 cut(s) 23, 346
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 308
MalI GATC 3 cut(s) 86, 326, 426
MboI GATC 3 cut(s) 84, 324, 424
MboII GAAGA 5 cut(s) 139, 252, 273, 276, 500
MflI RGATCY 1 cut(s) 84
MluCI AATT 5 cut(s) 35, 186, 200, 212, 515
MlyI GAGTC 1 cut(s) 276
MnlI CCTC 3 cut(s) 25, 173, 337
MroNI GCCGGC 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 2 cut(s) 57, 520
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 113
NaeI GCCGGC 1 cut(s) 319
NdeII GATC 3 cut(s) 84, 324, 424
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 2 cut(s) 74, 442
NmeAIII GCCGAG 1 cut(s) 396
NspV TTCGAA 2 cut(s) 238, 501
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdiI GCCGGC 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 4 cut(s) 101, 235, 412, 503
PkrI GCNGC 2 cut(s) 13, 361
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 320
PsuI RGATCY 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 57, 520
SatI GCNGC 2 cut(s) 12, 360
Sau3AI GATC 3 cut(s) 84, 324, 424
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 1 cut(s) 276
SetI ASST 3 cut(s) 135, 313, 403
SfaNI GCATC 1 cut(s) 339
SfuI TTCGAA 2 cut(s) 238, 501
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 5 cut(s) 35, 186, 200, 212, 515
SsiI CCGC 3 cut(s) 68, 362, 375
SspMI CTAG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 272
TaqI TCGA 5 cut(s) 30, 168, 238, 369, 501
TasI AATT 5 cut(s) 35, 186, 200, 212, 515
TfiI GAWTC 4 cut(s) 101, 235, 412, 503
Tru1I TTAA 2 cut(s) 57, 520
Tru9I TTAA 2 cut(s) 57, 520
TscAI CASTG 1 cut(s) 460
TseI GCWGC 2 cut(s) 11, 359
TspDTI ATGAA 1 cut(s) 427
TspRI CASTG 1 cut(s) 460
XapI RAATTY 4 cut(s) 35, 200, 212, 515
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.