RLG00000010324

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019476
Physical Location & Seq
Forward (+)
669863 .. 671396
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010324

Sequence Viewer

Length: 558 bp
ATGAGAAGCAGGCCTATAGTAAACACAGCAGCCACCATCCCTCCAAAGATGATGAACGGTGTGGGAATGCAGTCATCACAACTCAGGCTCTCATCAACGCCAGTGCAGACACACTTCTCGAACTGTGCCGAACGCGAGAATAGAGCTTTGCCATTACTTTTTGCACTGTGGTCTGTTTCTGCGTGGCTCTGTTTGCTTGCTCCACGAAGAGAGAGGCAAAAAGGATCGAGAGAGCCAGACAGGTCAAGAAGGATCGAGAGTGTGCAGGTGTGTTTCTTCGCTTTGCGCGGAGAGAGAGAGAGAGAGAGAGGAGATATTAAGGATCGAGAGAGTGCAGGTATTCTTTTCTTTTTTGGCAGTCTGTGTTTAATCCGGATTTTGTGCATATTGAAGGGGGAGAGGTTTGGACTAGAAACAAAGAAAACGACGAATCTTGGTATTATTGCTGGTGTGGCTGCTCTGGTTTTTGGATTCAGTGAGTTGCCTGAAGTGGGTTGGAGGGTGAAGAGGGTCTCATCACTGAACGGTACTGTTTTCTGTTCGATATCTCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.72

Weight (kDa)

10.34

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019476)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010324 RLG00000021423
rosa_multiflora Rmu_sc0004140.1_g000012
rosa_roxburghii Rroxscaffold_1G00007260
rosa_samantha Rh5AG237800 Rh5CG467800 Rh6DG319800 Rh7DG406600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 2 cut(s) 256, 326
AccII CGCG 2 cut(s) 135, 288
AccIII TCCGGA 1 cut(s) 372
AciI CCGC 1 cut(s) 288
AclWI GGATC 3 cut(s) 232, 260, 330
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 1 cut(s) 391
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 517
AlwI GGATC 3 cut(s) 232, 260, 330
Aor13HI TCCGGA 1 cut(s) 372
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 29, 455
AspLEI GCGC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 514
BbvI GCAGC 2 cut(s) 41, 442
BccI CCATC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 15
BfuAI ACCTGC 2 cut(s) 256, 326
BisI GCNGC 2 cut(s) 30, 456
BlsI GCNGC 2 cut(s) 31, 457
BsaI GGTCTC 1 cut(s) 517
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 372
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 2 cut(s) 41, 442
BsgI GTGCAG 3 cut(s) 125, 284, 354
Bsh1236I CGCG 2 cut(s) 135, 288
BshFI GGCC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 517
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 1 cut(s) 13
Bso31I GGTCTC 1 cut(s) 517
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 3 cut(s) 224, 252, 322
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 372
BspFNI CGCG 2 cut(s) 135, 288
BspMI ACCTGC 2 cut(s) 256, 326
BspPI GGATC 3 cut(s) 232, 260, 330
BspTNI GGTCTC 1 cut(s) 517
BsrI ACTGG 1 cut(s) 101
BssMI GATC 3 cut(s) 224, 252, 322
Bst4CI ACNGT 5 cut(s) 59, 125, 168, 527, 532
Bst6I CTCTTC 2 cut(s) 202, 500
BstC8I GCNNGC 2 cut(s) 11, 198
BstDEI CTNAG 2 cut(s) 83, 549
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 2 cut(s) 135, 288
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 3 cut(s) 227, 255, 325
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 3 cut(s) 224, 252, 322
BstMWI GCNNNNNNNGC 2 cut(s) 193, 452
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 2 cut(s) 135, 288
BstV1I GCAGC 2 cut(s) 41, 442
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 4 cut(s) 108, 164, 481, 518
BveI ACCTGC 2 cut(s) 256, 326
Cac8I GCNNGC 2 cut(s) 11, 198
CfoI GCGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 528
CviJI RGCY 7 cut(s) 13, 32, 88, 146, 187, 235, 455
CviKI_1 RGCY 7 cut(s) 13, 32, 88, 146, 187, 235, 455
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 2 cut(s) 83, 549
DpnI GATC 3 cut(s) 226, 254, 324
DpnII GATC 3 cut(s) 224, 252, 322
Eam1104I CTCTTC 2 cut(s) 202, 500
EarI CTCTTC 2 cut(s) 202, 500
Eco147I AGGCCT 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 517
Eco32I GATATC 1 cut(s) 546
Eco57I CTGAAG 1 cut(s) 507
EcoRV GATATC 1 cut(s) 546
FaiI YATR 2 cut(s) 17, 386
Fnu4HI GCNGC 2 cut(s) 30, 456
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 30, 456
FspBI CTAG 1 cut(s) 410
GlaI GCGC 1 cut(s) 287
GluI GCNGC 2 cut(s) 30, 456
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 373
HhaI GCGC 1 cut(s) 288
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HinfI GANTC 2 cut(s) 430, 471
HpaII CCGG 1 cut(s) 373
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 6 cut(s) 118, 228, 246, 256, 326, 373
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 2 cut(s) 243, 385
HpyCH4III ACNGT 5 cut(s) 59, 125, 168, 527, 532
HpyCH4V TGCA 6 cut(s) 70, 106, 164, 265, 335, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 452
HpyF3I CTNAG 2 cut(s) 83, 549
HspAI GCGC 1 cut(s) 286
Kpn2I TCCGGA 1 cut(s) 372
Kzo9I GATC 3 cut(s) 224, 252, 322
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 2 cut(s) 41, 442
MaeI CTAG 1 cut(s) 410
MalI GATC 3 cut(s) 226, 254, 324
MboI GATC 3 cut(s) 224, 252, 322
MboII GAAGA 3 cut(s) 219, 268, 517
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 6 cut(s) 51, 207, 302, 393, 492, 501
MroI TCCGGA 1 cut(s) 372
MseI TTAA 3 cut(s) 318, 368, 556
MspI CCGG 1 cut(s) 373
Mva1269I GAATGC 1 cut(s) 72
MvnI CGCG 2 cut(s) 135, 288
MwoI GCNNNNNNNGC 2 cut(s) 193, 452
NdeII GATC 3 cut(s) 224, 252, 322
PaqCI CACCTGC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 13
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 430, 471
PkrI GCNGC 2 cut(s) 31, 457
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 318, 368, 556
SatI GCNGC 2 cut(s) 30, 456
Sau3AI GATC 3 cut(s) 224, 252, 322
SetI ASST 5 cut(s) 148, 245, 270, 340, 404
SfcI CTRYAG 1 cut(s) 15
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 1 cut(s) 288
SspMI CTAG 1 cut(s) 410
StuI AGGCCT 1 cut(s) 13
TaaI ACNGT 5 cut(s) 59, 125, 168, 527, 532
TaqI TCGA 5 cut(s) 119, 227, 255, 325, 542
TfiI GAWTC 2 cut(s) 430, 471
Tru1I TTAA 3 cut(s) 318, 368, 556
Tru9I TTAA 3 cut(s) 318, 368, 556
TscAI CASTG 4 cut(s) 108, 171, 481, 525
TseI GCWGC 2 cut(s) 29, 455
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 4 cut(s) 108, 171, 481, 525
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.