Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0019476

Physical Location & Seq

Genomic Coordinates Reverse (-)

56775949 .. 56786022

Gene Structure 10074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG406600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGATGCTCTGTATATGCGCTGATACATGCAAGAGTTGCAGAAAGTGGAAGGAGGTTTTCTAAGTTTGGGATTTTAGTGATTGATTGGGAGAGGTTGAAGGTAATATCGATCTTACTCGATCAAGTGTGTCGTTCAAGCTGTTGGATGCGAAGGTCAGTTGATAGCAGTTTGCAATTACTTTTTGCACTATGGTCTGTTTCTGCGTGGCTCTGTTTGCTTGCTCCACGAAGAGAGAGGCAAGAAGGATCGAGAGAGCCAGACAGGTCAAGAAGGATCGAGAGTGTGCAGGTGTGTTTCTTTGCTTTGCGCGGAGAGAGAGAGGAGATATTCAGGATCGAGAGAGTGCAGGGGGAGAGGTTTGGACTGGAAACAAAGAAAACGACGAATCTTGGTATTATTGCTGGTGTGGCTGCTCTGGTTTTTGGATTCAATGAGTTGCCTGAAGTGGGTTGGAGGGTGAAGAGGGTCTCATCACTGAACGGTTCTGAAGCGGAGGAGAAGAATGGCAAGAAATTAAAAGTGAAGATGTTGATCGGGTGCCTGATTCCAAATTCTAACAAGACTGATCGGGCTTCAATGCTGGATGAGGCAATTGAGTATTTGAAGCAGCTCCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010029 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

207

Amino Acids

23.74

Weight (kDa)

9.61

Isoelectric Point (pI)

61.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019476)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010324 RLG00000021423
rosa_multiflora	Rmu_sc0004140.1_g000012
rosa_roxburghii	Rroxscaffold_1G00007260
rosa_samantha	Rh5AG237800 Rh5CG467800 Rh6DG319800 Rh7DG406600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	540
AccII	CGCG	1 cut(s)	312
AciI	CCGC	2 cut(s)	312, 494
AclWI	GGATC	3 cut(s)	256, 284, 344
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	465, 510
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	5 cut(s)	100, 138, 433, 579, 607
AluBI	AGCT	3 cut(s)	141, 613, 619
AluI	AGCT	3 cut(s)	141, 613, 619
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	3 cut(s)	256, 284, 344
ApeKI	GCWGC	2 cut(s)	413, 610
ApoI	RAATTY	1 cut(s)	553
AspLEI	GCGC	2 cut(s)	22, 312
AsuHPI	GGTGA	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	2 cut(s)	414, 611
BlsI	GCNGC	2 cut(s)	415, 612
BmiI	GGNNCC	1 cut(s)	542
BmsI	GCATC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	533
BseCI	ATCGAT	1 cut(s)	110
BseGI	GGATG	2 cut(s)	153, 592
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	2 cut(s)	338, 512
BseXI	GCAGC	1 cut(s)	400
BsgI	GTGCAG	2 cut(s)	308, 368
Bsh1236I	CGCG	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	540
BshVI	ATCGAT	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	475
Bso31I	GGTCTC	1 cut(s)	475
Bsp143I	GATC	7 cut(s)	111, 121, 248, 276, 336, 534, 568
BspACI	CCGC	2 cut(s)	312, 494
BspDI	ATCGAT	1 cut(s)	110
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	542
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	3 cut(s)	256, 284, 344
BspT107I	GGYRCC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	372
BssMI	GATC	7 cut(s)	111, 121, 248, 276, 336, 534, 568
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	226, 458
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	153, 592
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	22, 312
BstKTI	GATC	7 cut(s)	114, 124, 251, 279, 339, 537, 571
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	7 cut(s)	111, 121, 248, 276, 336, 534, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 217, 410, 616
BstNSI	RCATGY	1 cut(s)	32
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	400
Bsu15I	ATCGAT	1 cut(s)	110
BsuTUI	ATCGAT	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	153, 592
BtsIMutI	CAGTG	1 cut(s)	476
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	2 cut(s)	22, 312
ClaI	ATCGAT	1 cut(s)	110
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	7 cut(s)	141, 211, 259, 413, 575, 613, 619
CviKI_1	RGCY	7 cut(s)	141, 211, 259, 413, 575, 613, 619
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	7 cut(s)	113, 123, 250, 278, 338, 536, 570
DpnII	GATC	7 cut(s)	111, 121, 248, 276, 336, 534, 568
Eam1104I	CTCTTC	2 cut(s)	226, 458
EarI	CTCTTC	2 cut(s)	226, 458
Eco31I	GGTCTC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	465, 510
FaeI	CATG	1 cut(s)	32
FaiI	YATR	4 cut(s)	16, 18, 30, 193
FatI	CATG	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	414, 611
FokI	GGATG	2 cut(s)	160, 599
Fsp4HI	GCNGC	2 cut(s)	414, 611
GlaI	GCGC	2 cut(s)	21, 311
GluI	GCNGC	2 cut(s)	414, 611
GsuI	CTGGAG	1 cut(s)	599
HhaI	GCGC	2 cut(s)	22, 312
Hin1II	CATG	1 cut(s)	32
Hin6I	GCGC	2 cut(s)	20, 310
HinP1I	GCGC	2 cut(s)	20, 310
HinfI	GANTC	3 cut(s)	388, 429, 547
HphI	GGTGA	1 cut(s)	472
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	5 cut(s)	252, 270, 280, 334, 340
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	5 cut(s)	45, 94, 147, 239, 267
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	6 cut(s)	32, 41, 175, 188, 289, 349
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 217, 410, 616
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	32
HspAI	GCGC	2 cut(s)	20, 310
Kzo9I	GATC	7 cut(s)	111, 121, 248, 276, 336, 534, 568
LmnI	GCTCC	2 cut(s)	229, 618
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	138
MalI	GATC	7 cut(s)	113, 123, 250, 278, 338, 536, 570
MboI	GATC	7 cut(s)	111, 121, 248, 276, 336, 534, 568
MboII	GAAGA	4 cut(s)	243, 475, 514, 538
MfeI	CAATTG	1 cut(s)	594
MluCI	AATT	4 cut(s)	176, 515, 553, 594
MmeI	TCCRAC	2 cut(s)	125, 434
MnlI	CCTC	9 cut(s)	48, 87, 231, 316, 351, 450, 459, 490, 583
MseI	TTAA	2 cut(s)	518, 622
MunI	CAATTG	1 cut(s)	594
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	38, 217, 410, 616
NdeII	GATC	7 cut(s)	111, 121, 248, 276, 336, 534, 568
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	542
NspI	RCATGY	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	388, 429, 547
PkrI	GCNGC	2 cut(s)	415, 612
PspN4I	GGNNCC	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	518, 622
SatI	GCNGC	2 cut(s)	414, 611
Sau3AI	GATC	7 cut(s)	111, 121, 248, 276, 336, 534, 568
SfaNI	GCATC	1 cut(s)	138
Sse9I	AATT	4 cut(s)	176, 515, 553, 594
SsiI	CCGC	2 cut(s)	312, 494
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	5 cut(s)	110, 120, 251, 279, 339
TasI	AATT	4 cut(s)	176, 515, 553, 594
TfiI	GAWTC	3 cut(s)	388, 429, 547
Tru1I	TTAA	2 cut(s)	518, 622
Tru9I	TTAA	2 cut(s)	518, 622
TscAI	CASTG	1 cut(s)	483
TseI	GCWGC	2 cut(s)	413, 610
TspRI	CASTG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.