Rroxscaffold_1G00007260

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
9306958 .. 9309783
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007260.1

Sequence Viewer

Length: 240 bp
ATGCTTTCATCTAATATACGTCATTGTGCGTATTATTATACATACATACATTTAAAGTTGAAAGCACTTTTCATTCTGGTTGGTTTCCGCGTGGCTTTGTTTGCTTGCTCCACGAAGAGAGAGAGAGATCAAGAAGGATCGAGAGAGCCAGACAGGTCAAGAAGGATCGAGATCCAAGTGTGTGTGCAGGTGTGTTTCTTAGCTTTCTGCAGAGAGAGAGAGAGAGAGAGAGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.59

Weight (kDa)

9.19

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019476)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 178
Acc36I ACCTGC 1 cut(s) 178
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 88
AclWI GGATC 3 cut(s) 145, 166, 173
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
AlwI GGATC 3 cut(s) 145, 166, 173
BfmI CTRYAG 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 170
BseJI GATNNNNATC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 90
Bsp143I GATC 4 cut(s) 127, 137, 165, 171
BspACI CCGC 1 cut(s) 88
BspFNI CGCG 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 212
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 3 cut(s) 145, 166, 173
BssMI GATC 4 cut(s) 127, 137, 165, 171
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 4 cut(s) 130, 140, 168, 174
BstMBI GATC 4 cut(s) 127, 137, 165, 171
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 208
BstUI CGCG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 106
CviJI RGCY 3 cut(s) 95, 148, 203
CviKI_1 RGCY 3 cut(s) 95, 148, 203
DdeI CTNAG 1 cut(s) 199
DpnI GATC 4 cut(s) 129, 139, 167, 173
DpnII GATC 4 cut(s) 127, 137, 165, 171
DraI TTTAAA 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
FaiI YATR 4 cut(s) 17, 39, 43, 47
Hpy188III TCNNGA 4 cut(s) 131, 141, 159, 169
HpyAV CCTTC 2 cut(s) 128, 156
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 187, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 19
Kzo9I GATC 4 cut(s) 127, 137, 165, 171
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 4 cut(s) 62, 139, 162, 173
MaeII ACGT 1 cut(s) 19
MalI GATC 4 cut(s) 129, 139, 167, 173
MboI GATC 4 cut(s) 127, 137, 165, 171
MboII GAAGA 1 cut(s) 127
MflI RGATCY 1 cut(s) 171
MseI TTAA 1 cut(s) 53
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 4 cut(s) 127, 137, 165, 171
PaqCI CACCTGC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 171
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 4 cut(s) 127, 137, 165, 171
SetI ASST 4 cut(s) 22, 158, 192, 205
SfcI CTRYAG 1 cut(s) 208
SsiI CCGC 1 cut(s) 88
TaiI ACGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 140, 168
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.