RLG00000010754

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019473
Physical Location & Seq
Reverse (-)
4123872 .. 4124780
909 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010754

Sequence Viewer

Length: 645 bp
ATGGCTGACAAAAAAAGTCTAAACATGTCTATTCTATTAGGACGTCCAAGGCCAAATGCAACATTAGGACAGAGATCCATCGATGTTGAAGGAGGGGATCTTGTCTTTTTCTTCATGTCTGACCTAGCACTGCTAGGGTTTACTCGACCGCGGTGGCTTTCGAGAAAATTCTCAAACATGACTGGCTCGGGCTCGGGCTCGGGGCAAAGTTCTACGGTGGTTTTGTCGGTATTTCACACTGCCGAGAATTTGACGGACGCATTCGGCCTCTGTTGGTTGGTTGAAAAGGATGCCGGTGGTCGCGGTGATCCAGTTTGGCCTATGACCGATGGTGAAACTGGCGGCTGGGGTGGTTTTGATGGCCTAAAATGGGAGTGGGTCTGGAAGCGGTTTGGTCCTGGTGACGGTGCAGCCTCTGACACGGTGGTGGTGCTGATGGTGCCTAACGTGGCGCGAGGTCGGTGCTCCTCGATGGCTTCCCGGCCCGGCGGTGGTGGTGGCTTGATATGCTGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGAGACTTTGGGGTGTACTCAGCAACTATCACCAGTTGGGCCATTTGGGCCTGTTTCTGGAGTGTGGACCTTAAGCAATGTTGTGAGTGGGTGGGCTGGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

22.22

Weight (kDa)

6.57

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019473)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010754
rosa_multiflora Rmu_sc0006453.1_g000042 Rmu_sc0006914.1_g000001
rosa_samantha Rh4AG097600 Rh4CG106800 Rh6AG466200 Rh6BG434900 Rh6CG480900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 439
AccII CGCG 3 cut(s) 151, 303, 454
AciI CCGC 6 cut(s) 149, 151, 303, 342, 388, 489
AclWI GGATC 3 cut(s) 69, 105, 302
AcsI RAATTY 2 cut(s) 167, 247
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 4 cut(s) 370, 404, 491, 596
AflII CTTAAG 1 cut(s) 610
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 89, 284
AjnI CCWGG 1 cut(s) 397
AleI CACNNNNGTG 1 cut(s) 425
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 3 cut(s) 69, 105, 302
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 3 cut(s) 187, 193, 199
AoxI GGCC 7 cut(s) 50, 265, 317, 361, 482, 578, 587
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 2 cut(s) 167, 247
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 6 cut(s) 395, 483, 578, 587, 606, 639
AsuC2I CCSGG 2 cut(s) 481, 486
AsuHPI GGTGA 4 cut(s) 317, 344, 413, 561
AvaI CYCGRG 3 cut(s) 187, 193, 199
AvaII GGWCC 3 cut(s) 395, 606, 639
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 2 cut(s) 194, 200
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 422
BccI CCATC 5 cut(s) 86, 323, 353, 430, 466
BcgI CGANNNNNNTGC 2 cut(s) 444, 478
BciT130I CCWGG 1 cut(s) 399
BcnI CCSGG 2 cut(s) 481, 486
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 2 cut(s) 125, 134
BfrI CTTAAG 1 cut(s) 610
BglI GCCNNNNNGGC 1 cut(s) 586
BisI GCNGC 2 cut(s) 343, 411
BlsI GCNGC 2 cut(s) 344, 412
Bme1390I CCNGG 3 cut(s) 399, 481, 486
Bme18I GGWCC 3 cut(s) 395, 606, 639
BmeT110I CYCGRG 3 cut(s) 187, 193, 199
BmgT120I GGNCC 6 cut(s) 395, 483, 578, 587, 606, 639
BmiI GGNNCC 2 cut(s) 441, 640
BmrFI CCNGG 3 cut(s) 399, 481, 486
BmsI GCATC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 618
BpuMI CCSGG 2 cut(s) 481, 486
Bsa29I ATCGAT 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 47, 149
Bsc4I CCNNNNNNNGG 4 cut(s) 370, 404, 491, 596
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 4 cut(s) 187, 311, 343, 572
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 399
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 47, 149
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 4 cut(s) 370, 404, 491, 596
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 4 cut(s) 187, 311, 343, 572
BseRI GAGGAG 1 cut(s) 457
BseXI GCAGC 1 cut(s) 422
BseYI CCCAGC 3 cut(s) 345, 510, 635
BsgI GTGCAG 1 cut(s) 429
Bsh1236I CGCG 3 cut(s) 151, 303, 454
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 7 cut(s) 52, 267, 319, 363, 484, 580, 589
BshNI GGYRCC 1 cut(s) 439
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 3 cut(s) 187, 193, 199
BsiSI CCGG 3 cut(s) 294, 481, 486
BslI CCNNNNNNNGG 4 cut(s) 370, 404, 491, 596
BsmAI GTCTC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 7 cut(s) 52, 267, 319, 363, 484, 580, 589
BsoBI CYCGRG 3 cut(s) 187, 193, 199
Bsp1286I GDGCHC 3 cut(s) 194, 200, 467
Bsp143I GATC 3 cut(s) 74, 97, 307
BspACI CCGC 6 cut(s) 149, 151, 303, 342, 388, 489
BspANI GGCC 7 cut(s) 52, 267, 319, 363, 484, 580, 589
BspCNI CTCAG 1 cut(s) 571
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 3 cut(s) 151, 303, 454
BspLI GGNNCC 2 cut(s) 441, 640
BspPI GGATC 3 cut(s) 69, 105, 302
BspT107I GGYRCC 1 cut(s) 439
BspTI CTTAAG 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 4 cut(s) 187, 311, 343, 572
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 47, 149
BssMI GATC 3 cut(s) 74, 97, 307
BssNI GRCGYC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 3 cut(s) 217, 407, 424
BstACI GRCGYC 1 cut(s) 43
BstAFI CTTAAG 1 cut(s) 610
BstDEI CTNAG 1 cut(s) 558
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 3 cut(s) 151, 303, 454
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 3 cut(s) 77, 100, 310
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 74, 97, 307
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 3 cut(s) 439, 507, 586
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 3 cut(s) 397, 479, 484
BstUI CGCG 3 cut(s) 151, 303, 454
BstV1I GCAGC 1 cut(s) 422
BstX2I RGATCY 2 cut(s) 74, 97
BstYI RGATCY 2 cut(s) 74, 97
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 7 cut(s) 52, 267, 319, 363, 484, 580, 589
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 295
BtsI GCAGTG 2 cut(s) 128, 237
BtsIMutI CAGTG 2 cut(s) 128, 237
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 6 cut(s) 395, 483, 578, 587, 606, 639
Cfr42I CCGCGG 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 555
CviAII CATG 3 cut(s) 25, 115, 178
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 1 cut(s) 558
DpnI GATC 3 cut(s) 76, 99, 309
DpnII GATC 3 cut(s) 74, 97, 307
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 194, 200
Eco47I GGWCC 3 cut(s) 395, 606, 639
Eco88I CYCGRG 3 cut(s) 187, 193, 199
EcoO109I RGGNCCY 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 194, 200
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 3 cut(s) 28, 118, 181
FaiI YATR 5 cut(s) 26, 116, 179, 323, 508
FatI CATG 3 cut(s) 24, 114, 177
Fnu4HI GCNGC 2 cut(s) 343, 411
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 2 cut(s) 194, 200
Fsp4HI GCNGC 2 cut(s) 343, 411
FspBI CTAG 2 cut(s) 125, 134
GlaI GCGC 1 cut(s) 453
GluI GCNGC 2 cut(s) 343, 411
GsaI CCCAGC 3 cut(s) 349, 514, 639
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 7 cut(s) 52, 267, 319, 363, 484, 580, 589
HapII CCGG 3 cut(s) 294, 481, 486
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 3 cut(s) 28, 118, 181
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HpaII CCGG 3 cut(s) 294, 481, 486
HphI GGTGA 4 cut(s) 317, 344, 413, 561
Hpy166II GTNNAC 3 cut(s) 141, 555, 606
Hpy188I TCNGA 2 cut(s) 121, 418
Hpy188III TCNNGA 3 cut(s) 162, 382, 597
Hpy8I GTNNAC 3 cut(s) 141, 555, 606
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 3 cut(s) 217, 407, 424
HpyCH4IV ACGT 2 cut(s) 43, 447
HpyCH4V TGCA 2 cut(s) 59, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 439, 507, 586
HpyF3I CTNAG 1 cut(s) 558
HpySE526I ACGT 2 cut(s) 43, 447
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 3 cut(s) 28, 118, 181
HspAI GCGC 1 cut(s) 452
KspI CCGCGG 1 cut(s) 152
Kzo9I GATC 3 cut(s) 74, 97, 307
LmnI GCTCC 1 cut(s) 470
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 125, 134
MaeII ACGT 2 cut(s) 43, 447
MaeIII GTNAC 1 cut(s) 401
MalI GATC 3 cut(s) 76, 99, 309
MboI GATC 3 cut(s) 74, 97, 307
MboII GAAGA 1 cut(s) 103
MflI RGATCY 2 cut(s) 74, 97
MhlI GDGCHC 3 cut(s) 194, 200, 467
MluCI AATT 2 cut(s) 167, 247
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 5 cut(s) 86, 278, 424, 449, 478
MseI TTAA 1 cut(s) 611
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 151
MspCI CTTAAG 1 cut(s) 610
MspI CCGG 3 cut(s) 294, 481, 486
MspR9I CCNGG 3 cut(s) 399, 481, 486
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 3 cut(s) 151, 303, 454
MwoI GCNNNNNNNGC 3 cut(s) 439, 507, 586
NciI CCSGG 2 cut(s) 481, 486
NdeII GATC 3 cut(s) 74, 97, 307
NlaIII CATG 3 cut(s) 28, 118, 181
NlaIV GGNNCC 2 cut(s) 441, 640
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 425
PciI ACATGT 1 cut(s) 24
PctI GAATGC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 344, 412
PpuMI RGGWCCY 1 cut(s) 639
PscI ACATGT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 3 cut(s) 345, 510, 635
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 441, 640
PspPI GGNCC 6 cut(s) 395, 483, 578, 587, 606, 639
PspPPI RGGWCCY 1 cut(s) 639
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 74, 97
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 425
SacII CCGCGG 1 cut(s) 152
SaqAI TTAA 1 cut(s) 611
SatI GCNGC 2 cut(s) 343, 411
Sau3AI GATC 3 cut(s) 74, 97, 307
Sau96I GGNCC 6 cut(s) 395, 483, 578, 587, 606, 639
ScrFI CCNGG 3 cut(s) 399, 481, 486
SduI GDGCHC 3 cut(s) 194, 200, 467
SetI ASST 5 cut(s) 46, 126, 450, 460, 611
SfaNI GCATC 1 cut(s) 280
SfiI GGCCNNNNNGGCC 1 cut(s) 586
Sfr303I CCGCGG 1 cut(s) 152
SgrBI CCGCGG 1 cut(s) 152
SinI GGWCC 3 cut(s) 395, 606, 639
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
Sse9I AATT 2 cut(s) 167, 247
SsiI CCGC 6 cut(s) 149, 151, 303, 342, 388, 489
SspMI CTAG 2 cut(s) 125, 134
StyD4I CCNGG 3 cut(s) 397, 479, 484
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 217, 407, 424
TaiI ACGT 2 cut(s) 46, 450
TaqI TCGA 4 cut(s) 81, 145, 161, 470
TaqII GACCGA 1 cut(s) 341
TasI AATT 2 cut(s) 167, 247
TatI WGTACW 1 cut(s) 554
TauI GCSGC 1 cut(s) 345
Tru1I TTAA 1 cut(s) 611
Tru9I TTAA 1 cut(s) 611
TscAI CASTG 2 cut(s) 135, 244
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 2 cut(s) 135, 244
Vha464I CTTAAG 1 cut(s) 610
VpaK11BI GGWCC 3 cut(s) 395, 606, 639
XapI RAATTY 2 cut(s) 167, 247
XceI RCATGY 1 cut(s) 28
XspI CTAG 2 cut(s) 125, 134
ZraI GACGTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.