Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019473

Physical Location & Seq

Genomic Coordinates Forward (+)

20835780 .. 20838533

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG097600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTTTCGTTCGTTTCCAACGCCTTGTTTAGTAGGAGTGTCGGTATCTACGACCTAAGTTCTGCTGCAGGCTGGGGTCGACATGATGACGCTGGTGTGGTTAAGTGGAGACATAGGAACTTTTGCAGAGAATATGCCAGGAGAGGGAAATATGCTGTGGACTTATGTATTTGCTTCAGGTTGTTGGGTACTCCAAATGAAACAGTGTGGCCAGGTGTAAGCAAACTCAGGAACTGGCATGAGTATCCTCAGTGGAGCCCTCAGAGTTTGTCCAATTTGGATGCTGATGGGTTGCATCTGTTGTCGGAAATGTTGCAAGAATATGCTGTGGACTTATGTATTTGCTTCAGGTTGTTGGGTACTCCAAATGAAACAGTGTGGCCATGTGTAAGCAAACTCAGGAACTGGCATGAGTATCCTCAGTGGAGCCCTCAGAGTTTGTCCAATTTGGATGCTGATGGGTTGCATCTGTTGTCGGAAATGTTGCAATATGAGCCTGGAAAACACATGTCAACAAAGAAGGCTATGGAACACCCTTACTTTGATGATTTGAACAAAGCTGGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

189

Amino Acids

21.78

Weight (kDa)

6.43

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019473)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010754
rosa_multiflora	Rmu_sc0006453.1_g000042 Rmu_sc0006914.1_g000001
rosa_samantha	Rh4AG097600 Rh4CG106800 Rh6AG466200 Rh6BG434900 Rh6CG480900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	79
AcoI	YGGCCR	2 cut(s)	209, 380
AcuI	CTGAAG	2 cut(s)	160, 331
AfaI	GTAC	2 cut(s)	190, 361
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	1 cut(s)	553
AjnI	CCWGG	3 cut(s)	137, 211, 496
AluBI	AGCT	1 cut(s)	560
AluI	AGCT	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	103
AlwNI	CAGNNNCTG	2 cut(s)	234, 405
AoxI	GGCC	2 cut(s)	209, 380
ApeKI	GCWGC	1 cut(s)	65
BalI	TGGCCA	2 cut(s)	211, 382
BanII	GRGCYC	2 cut(s)	260, 431
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	281, 452
BciT130I	CCWGG	3 cut(s)	139, 213, 498
BciVI	GTATCC	2 cut(s)	255, 426
BcoDI	GTCTC	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	2 cut(s)	255, 426
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	3 cut(s)	139, 213, 498
BmiI	GGNNCC	2 cut(s)	257, 428
BmrFI	CCNGG	3 cut(s)	139, 213, 498
BmsI	GCATC	4 cut(s)	271, 304, 442, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	239, 410
BseBI	CCWGG	3 cut(s)	139, 213, 498
BseGI	GGATG	2 cut(s)	286, 457
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	6 cut(s)	241, 263, 275, 412, 434, 446
BseNI	ACTGG	2 cut(s)	239, 410
BseXI	GCAGC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	72
BshFI	GGCC	2 cut(s)	211, 382
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	211, 382
Bsp1286I	GDGCHC	2 cut(s)	260, 431
BspANI	GGCC	2 cut(s)	211, 382
BspCNI	CTCAG	6 cut(s)	240, 262, 274, 411, 433, 445
BspLI	GGNNCC	2 cut(s)	257, 428
BspMAI	CTGCAG	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	239, 410
Bst2UI	CCWGG	3 cut(s)	139, 213, 498
Bst4CI	ACNGT	2 cut(s)	205, 376
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	7 cut(s)	56, 227, 249, 261, 398, 420, 432
BstF5I	GGATG	2 cut(s)	286, 457
BstMAI	GTCTC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	3 cut(s)	139, 213, 498
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	3 cut(s)	137, 211, 496
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	52
BsuI	GTATCC	2 cut(s)	255, 426
BsuRI	GGCC	2 cut(s)	211, 382
BtsCI	GGATG	2 cut(s)	286, 457
BtsIMutI	CAGTG	4 cut(s)	210, 257, 381, 428
Cac8I	GCNNGC	1 cut(s)	70
CaiI	CAGNNNCTG	2 cut(s)	234, 405
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	189, 360
CviAII	CATG	5 cut(s)	83, 239, 384, 410, 508
CviJI	RGCY	8 cut(s)	72, 211, 258, 382, 429, 496, 524, 560
CviKI_1	RGCY	8 cut(s)	72, 211, 258, 382, 429, 496, 524, 560
CviQI	GTAC	2 cut(s)	189, 360
DdeI	CTNAG	7 cut(s)	56, 227, 249, 261, 398, 420, 432
EaeI	YGGCCR	2 cut(s)	209, 380
Eco24I	GRGCYC	2 cut(s)	260, 431
Eco57I	CTGAAG	2 cut(s)	160, 331
EcoRII	CCWGG	3 cut(s)	137, 211, 496
EcoT38I	GRGCYC	2 cut(s)	260, 431
FaeI	CATG	5 cut(s)	86, 242, 387, 413, 511
FatI	CATG	5 cut(s)	82, 238, 383, 409, 507
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	2 cut(s)	293, 464
FriOI	GRGCYC	2 cut(s)	260, 431
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	211, 382
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	5 cut(s)	86, 242, 387, 413, 511
HincII	GTYRAC	2 cut(s)	80, 513
HindII	GTYRAC	2 cut(s)	80, 513
Hpy166II	GTNNAC	4 cut(s)	80, 160, 331, 513
Hpy188I	TCNGA	5 cut(s)	264, 307, 435, 478, 569
Hpy188III	TCNNGA	2 cut(s)	229, 400
Hpy8I	GTNNAC	4 cut(s)	80, 160, 331, 513
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	2 cut(s)	205, 376
HpyCH4V	TGCA	6 cut(s)	68, 126, 295, 316, 466, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	7 cut(s)	56, 227, 249, 261, 398, 420, 432
Hsp92II	CATG	5 cut(s)	86, 242, 387, 413, 511
LmnI	GCTCC	2 cut(s)	255, 426
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	4 cut(s)	271, 304, 442, 475
MhlI	GDGCHC	2 cut(s)	260, 431
MlsI	TGGCCA	2 cut(s)	211, 382
MluCI	AATT	2 cut(s)	274, 445
MluNI	TGGCCA	2 cut(s)	211, 382
MmeI	TCCRAC	3 cut(s)	42, 285, 456
MnlI	CCTC	5 cut(s)	137, 258, 270, 429, 441
Mox20I	TGGCCA	2 cut(s)	211, 382
MscI	TGGCCA	2 cut(s)	211, 382
MseI	TTAA	1 cut(s)	102
Msp20I	TGGCCA	2 cut(s)	211, 382
MspR9I	CCNGG	3 cut(s)	139, 213, 498
MvaI	CCWGG	3 cut(s)	139, 213, 498
MwoI	GCNNNNNNNGC	1 cut(s)	493
NlaIII	CATG	5 cut(s)	86, 242, 387, 413, 511
NlaIV	GGNNCC	2 cut(s)	257, 428
NspI	RCATGY	1 cut(s)	511
PciI	ACATGT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	507
Psp6I	CCWGG	3 cut(s)	137, 211, 496
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	3 cut(s)	137, 211, 496
PspN4I	GGNNCC	2 cut(s)	257, 428
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	2 cut(s)	234, 405
RsaI	GTAC	2 cut(s)	190, 361
RsaNI	GTAC	2 cut(s)	189, 360
SalI	GTCGAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	66
ScrFI	CCNGG	3 cut(s)	139, 213, 498
SduI	GDGCHC	2 cut(s)	260, 431
SetI	ASST	5 cut(s)	57, 182, 217, 353, 562
SfaNI	GCATC	4 cut(s)	271, 304, 442, 475
SfcI	CTRYAG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	274, 445
StyD4I	CCNGG	3 cut(s)	137, 211, 496
TaaI	ACNGT	2 cut(s)	205, 376
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	274, 445
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	4 cut(s)	210, 257, 381, 428
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	213, 384
TspRI	CASTG	4 cut(s)	210, 257, 381, 428
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.