Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019473

Physical Location & Seq

Genomic Coordinates Forward (+)

64769080 .. 64769849

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG480900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAACCAATACCTCTAGTATTCAAACTGAGAGAAGCACTGATCCGGCGAGAGGGAAGCACGTGGTATGTGCAGTTGCACGGCCGTGCACTGAAGACCCTACTAAAGCAAATACATAAGTCCATAAAGCAAGCACTCTTCCCTAGGGATTCTGAACTGCAGCAGCTCCTACATATACTCAACTTGGCCAAGATGGCCCCAGCTTTGCCTTGGTTGTTGGGTACTCCAAATGAAACAGTGTGGCCAGGTGTAAGCAAACTCATGAACTGGCATGAGTACCCCCAATGTAGACCTCAGAGTTTGTCCAAAGCTGTTCCGAATTTGGATATTGATGGGTTGTATCTGTTGTTGGAAATGTTGCAATATGAGCTTGGAAAACACATTTCAGCAAAGAAGGCTATGGAACACCCTTACTTTGATGATTTGAACAAAGCTGGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

147

Amino Acids

16.95

Weight (kDa)

9.21

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019473)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010754
rosa_multiflora	Rmu_sc0006453.1_g000042 Rmu_sc0006914.1_g000001
rosa_samantha	Rh4AG097600 Rh4CG106800 Rh6AG466200 Rh6BG434900 Rh6CG480900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	3 cut(s)	82, 186, 242
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	113
AcvI	CACGTG	1 cut(s)	63
AfaI	GTAC	2 cut(s)	223, 278
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	25, 427
AjnI	CCWGG	1 cut(s)	244
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	5 cut(s)	166, 203, 311, 370, 434
AluI	AGCT	5 cut(s)	166, 203, 311, 370, 434
Alw21I	GWGCWC	1 cut(s)	91
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	4 cut(s)	82, 186, 195, 242
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	160, 163
ApoI	RAATTY	1 cut(s)	319
AspA2I	CCTAGG	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	196
AvrII	CCTAGG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	91
BalI	TGGCCA	2 cut(s)	188, 244
BbrPI	CACGTG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	172, 175
BccI	CCATC	2 cut(s)	187, 326
BceAI	ACGGC	2 cut(s)	69, 97
BciT130I	CCWGG	1 cut(s)	246
BfaI	CTAG	2 cut(s)	17, 144
BfmI	CTRYAG	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	161, 164
BlnI	CCTAGG	1 cut(s)	143
BlsI	GCNGC	2 cut(s)	162, 165
Bme1390I	CCNGG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	6, 198
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	143, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	143, 209
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	20, 308
BseNI	ACTGG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	91
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	172, 175
BseYI	CCCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	84, 188, 197, 244
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	52
BsnI	GGCC	4 cut(s)	84, 188, 197, 244
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	42
BspANI	GGCC	4 cut(s)	84, 188, 197, 244
BspCNI	CTCAG	2 cut(s)	21, 307
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	6, 198
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	143, 209
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	143, 209
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	29, 294
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 367, 395
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	172, 175
BstV2I	GAAGAC	1 cut(s)	101
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	84, 188, 197, 244
BtsIMutI	CAGTG	3 cut(s)	38, 89, 243
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	222, 277
CviAII	CATG	2 cut(s)	262, 272
CviQI	GTAC	2 cut(s)	222, 277
DdeI	CTNAG	2 cut(s)	29, 294
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EaeI	YGGCCR	3 cut(s)	82, 186, 242
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	143, 209
Eco52I	CGGCCG	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	113
Eco72I	CACGTG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	143, 209
ErhI	CCWWGG	2 cut(s)	143, 209
FaeI	CATG	2 cut(s)	265, 275
FaiI	YATR	9 cut(s)	69, 117, 125, 174, 176, 263, 273, 366, 401
FatI	CATG	2 cut(s)	261, 271
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	161, 164
Fsp4HI	GCNGC	2 cut(s)	161, 164
FspBI	CTAG	2 cut(s)	17, 144
GluI	GCNGC	2 cut(s)	161, 164
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	84, 188, 197, 244
HapII	CCGG	1 cut(s)	46
Hin1II	CATG	2 cut(s)	265, 275
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	89, 290
Hpy188I	TCNGA	4 cut(s)	154, 297, 318, 443
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	2 cut(s)	89, 290
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	5 cut(s)	73, 79, 89, 160, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 367, 395
HpyF3I	CTNAG	2 cut(s)	29, 294
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	265, 275
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	6 cut(s)	59, 213, 231, 253, 258, 420
Lsp1109I	GCAGC	2 cut(s)	172, 175
MaeI	CTAG	2 cut(s)	17, 144
MaeII	ACGT	1 cut(s)	62
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	106, 130
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	2 cut(s)	188, 244
MluCI	AATT	1 cut(s)	319
MluNI	TGGCCA	2 cut(s)	188, 244
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	3 cut(s)	24, 46, 303
Mox20I	TGGCCA	2 cut(s)	188, 244
MscI	TGGCCA	2 cut(s)	188, 244
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	2 cut(s)	188, 244
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	194, 367, 395
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	265, 275
NlaIV	GGNNCC	2 cut(s)	6, 198
OliI	CACNNNNGTG	1 cut(s)	84
PagI	TCATGA	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	162, 165
PmaCI	CACGTG	1 cut(s)	63
PmlI	CACGTG	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	244
PspCI	CACGTG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	6, 198
PspPI	GGNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	223, 278
RsaNI	GTAC	2 cut(s)	222, 277
RseI	CAYNNNNRTG	1 cut(s)	84
SatI	GCNGC	2 cut(s)	161, 164
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	9 cut(s)	16, 65, 168, 205, 250, 295, 313, 372, 436
SfcI	CTRYAG	1 cut(s)	158
SfiI	GGCCNNNNNGGCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	319
SspMI	CTAG	2 cut(s)	17, 144
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	2 cut(s)	143, 209
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	65
TasI	AATT	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	3 cut(s)	45, 96, 243
TseI	GCWGC	2 cut(s)	160, 163
TspDTI	ATGAA	2 cut(s)	246, 278
TspRI	CASTG	3 cut(s)	45, 96, 243
VneI	GTGCAC	1 cut(s)	87
XapI	RAATTY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmaJI	CCTAGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	2 cut(s)	17, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.