Rh6AG466200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019473
Physical Location & Seq
Forward (+)
64846907 .. 64865469
18563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG466200.1

Sequence Viewer

Length: 579 bp
ATGGCCTTGCAAATTAGACATTTGCTTTGCAAGGAATTATACCTTGACAGGGATGGTGATGGGATTGGTGATGCACAGGTTGGTGAAGAAAATAATCTTGCACACGCGGTTGATGGTGTTATTTGGGGTGCAAAGGAGTTTGAGAAGAATGATGTTTATGATGCAAATGGTATGGAGGCTCAGGCTCGGGATCGGGGCCAAAGTTCTACGGTGGTTTTGTCGGTATTTCGCACTGCCGAGAATTTGCCGTACGCATTCGGCCTCTGTTGGTTGGTTGAAAAGGATGCCGGTGGTCGCGGTGATCTAGTTTGGCCCATGCCCGATGGTGAAACTGGCGGCTGGGGTGGTTTTGATGTCCTAAAATGGGAGTGGGTCTGGGAGCGGTTTGGTCCTGGTGACGGTGCAGCCTCTTACCCGGTGGTGGTGCCTAACGTGGCGCGAGGTCGGTGTTCCTCGTTGGTTTCCCGGCCCAGCGGCGGTGGTGGCTTGATATGCTGGGGTGGAGACTTTGGGGTGGGTGTACTCAGCAACTATCACCAGTTGGGCCATTTGGGCCTGTTTATGGAGTGTGGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.7

Weight (kDa)

4.68

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019473)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010754
rosa_multiflora Rmu_sc0006453.1_g000042 Rmu_sc0006914.1_g000001
rosa_samantha Rh4AG097600 Rh4CG106800 Rh6AG466200 Rh6BG434900 Rh6CG480900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 424
AccBSI CCGCTC 1 cut(s) 382
AccII CGCG 3 cut(s) 107, 297, 439
AciI CCGC 6 cut(s) 107, 297, 336, 382, 474, 477
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 241
AfaI GTAC 2 cut(s) 251, 522
AfiI CCNNNNNNNGG 6 cut(s) 49, 364, 398, 421, 476, 562
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 7 cut(s) 3, 196, 259, 311, 467, 544, 553
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 241
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 7 cut(s) 196, 312, 389, 468, 544, 553, 572
AsuC2I CCSGG 2 cut(s) 416, 466
AsuHPI GGTGA 7 cut(s) 68, 80, 95, 311, 338, 407, 527
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 2 cut(s) 389, 572
BanI GGYRCC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 416
BccI CCATC 4 cut(s) 47, 53, 107, 317
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 393
BcnI CCSGG 2 cut(s) 416, 466
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 552
BisI GCNGC 3 cut(s) 337, 405, 475
BlsI GCNGC 3 cut(s) 338, 406, 476
Bme1390I CCNGG 3 cut(s) 393, 416, 466
Bme18I GGWCC 2 cut(s) 389, 572
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 7 cut(s) 196, 312, 389, 468, 544, 553, 572
BmiI GGNNCC 2 cut(s) 197, 426
BmrFI CCNGG 3 cut(s) 393, 416, 466
BmsI GCATC 3 cut(s) 61, 151, 274
Bpu10I CCTNAGC 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 416, 466
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 364, 398, 421, 476, 562
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 337, 538
BseBI CCWGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 58, 289
BseLI CCNNNNNNNGG 6 cut(s) 49, 364, 398, 421, 476, 562
BseMII CTCAG 2 cut(s) 194, 538
BseNI ACTGG 2 cut(s) 337, 538
BseXI GCAGC 1 cut(s) 416
BseYI CCCAGC 3 cut(s) 339, 470, 495
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 3 cut(s) 107, 297, 439
BshFI GGCC 7 cut(s) 5, 198, 261, 313, 469, 546, 555
BshNI GGYRCC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 3 cut(s) 288, 416, 466
BsiWI CGTACG 1 cut(s) 249
BslI CCNNNNNNNGG 6 cut(s) 49, 364, 398, 421, 476, 562
BsmAI GTCTC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 7 cut(s) 5, 198, 261, 313, 469, 546, 555
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 2 cut(s) 190, 301
BspACI CCGC 6 cut(s) 107, 297, 336, 382, 474, 477
BspANI GGCC 7 cut(s) 5, 198, 261, 313, 469, 546, 555
BspCNI CTCAG 2 cut(s) 193, 537
BspFNI CGCG 3 cut(s) 107, 297, 439
BspLI GGNNCC 2 cut(s) 197, 426
BspPI GGATC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 424
BsrBI CCGCTC 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 337, 538
BssAI RCCGGY 1 cut(s) 287
BssMI GATC 2 cut(s) 190, 301
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 211, 401
BstDEI CTNAG 2 cut(s) 180, 524
BstF5I GGATG 2 cut(s) 58, 289
BstFNI CGCG 3 cut(s) 107, 297, 439
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 2 cut(s) 193, 304
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 2 cut(s) 190, 301
BstMWI GCNNNNNNNGC 3 cut(s) 483, 492, 552
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 3 cut(s) 391, 414, 464
BstUI CGCG 3 cut(s) 107, 297, 439
BstV1I GCAGC 1 cut(s) 416
BsuRI GGCC 7 cut(s) 5, 198, 261, 313, 469, 546, 555
BtsCI GGATG 2 cut(s) 58, 289
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 7 cut(s) 196, 312, 389, 468, 544, 553, 572
Csp6I GTAC 2 cut(s) 250, 521
CviAII CATG 1 cut(s) 316
CviQI GTAC 2 cut(s) 250, 521
DdeI CTNAG 2 cut(s) 180, 524
DpnI GATC 2 cut(s) 192, 303
DpnII GATC 2 cut(s) 190, 301
Eco47I GGWCC 2 cut(s) 389, 572
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 391
FaeI CATG 1 cut(s) 319
FaiI YATR 6 cut(s) 40, 159, 173, 317, 493, 563
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 337, 405, 475
FokI GGATG 2 cut(s) 65, 296
Fsp4HI GCNGC 3 cut(s) 337, 405, 475
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 438
GluI GCNGC 3 cut(s) 337, 405, 475
GsaI CCCAGC 3 cut(s) 343, 474, 499
HaeIII GGCC 7 cut(s) 5, 198, 261, 313, 469, 546, 555
HapII CCGG 3 cut(s) 288, 416, 466
HhaI GCGC 1 cut(s) 439
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HpaII CCGG 3 cut(s) 288, 416, 466
HphI GGTGA 7 cut(s) 68, 80, 95, 311, 338, 407, 527
Hpy166II GTNNAC 2 cut(s) 521, 572
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 521, 572
HpyCH4III ACNGT 2 cut(s) 211, 401
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 7 cut(s) 10, 30, 74, 101, 131, 164, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 483, 492, 552
HpyF3I CTNAG 2 cut(s) 180, 524
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 190, 301
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 3 cut(s) 61, 151, 274
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 395
MalI GATC 2 cut(s) 192, 303
MbiI CCGCTC 1 cut(s) 382
MboI GATC 2 cut(s) 190, 301
MboII GAAGA 2 cut(s) 98, 157
MluCI AATT 3 cut(s) 12, 35, 241
MnlI CCTC 5 cut(s) 169, 272, 418, 434, 463
MseI TTAA 1 cut(s) 577
MspA1I CMGCKG 1 cut(s) 474
MspI CCGG 3 cut(s) 288, 416, 466
MspR9I CCNGG 3 cut(s) 393, 416, 466
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 393
MvnI CGCG 3 cut(s) 107, 297, 439
MwoI GCNNNNNNNGC 3 cut(s) 483, 492, 552
NciI CCSGG 2 cut(s) 416, 466
NdeII GATC 2 cut(s) 190, 301
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 197, 426
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 395
PctI GAATGC 1 cut(s) 254
Pfl23II CGTACG 1 cut(s) 249
PkrI GCNGC 3 cut(s) 338, 406, 476
Psp6I CCWGG 1 cut(s) 391
PspFI CCCAGC 3 cut(s) 339, 470, 495
PspGI CCWGG 1 cut(s) 391
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 197, 426
PspPI GGNCC 7 cut(s) 196, 312, 389, 468, 544, 553, 572
RsaI GTAC 2 cut(s) 251, 522
RsaNI GTAC 2 cut(s) 250, 521
SaqAI TTAA 1 cut(s) 577
SatI GCNGC 3 cut(s) 337, 405, 475
Sau3AI GATC 2 cut(s) 190, 301
Sau96I GGNCC 7 cut(s) 196, 312, 389, 468, 544, 553, 572
ScrFI CCNGG 3 cut(s) 393, 416, 466
SetI ASST 5 cut(s) 45, 81, 435, 445, 577
SfaNI GCATC 3 cut(s) 61, 151, 274
SfiI GGCCNNNNNGGCC 1 cut(s) 552
SinI GGWCC 2 cut(s) 389, 572
Sse9I AATT 3 cut(s) 12, 35, 241
SsiI CCGC 6 cut(s) 107, 297, 336, 382, 474, 477
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 3 cut(s) 391, 414, 464
TaaI ACNGT 2 cut(s) 211, 401
TaiI ACGT 1 cut(s) 435
TasI AATT 3 cut(s) 12, 35, 241
TatI WGTACW 1 cut(s) 520
TauI GCSGC 2 cut(s) 339, 477
Tru1I TTAA 1 cut(s) 577
Tru9I TTAA 1 cut(s) 577
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 395
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 389, 572
XapI RAATTY 1 cut(s) 241
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.