Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006453.1

Orthogroup ID

OG0019473

Physical Location & Seq

Genomic Coordinates Reverse (-)

106216 .. 110121

Gene Structure 3906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006453.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggataaagctaaaacttgtcaatttgggtatagcaagcccatgtttttcaaccaggcaagcattgagattctttacactcaagacattattggtccaaaaaagacaagacttggttatcaggagacactaaagatcactgaatccgggagtgtcccgttgaggactgagctaattcacatttcctactacaaacacgttagttttccctttcaatccctcttttcaacctccggagacccgtcgttcagaagcggtggctctgccgtgattccgttgaataataggactgagaatatggagaagacgaaaagcatggaggcttccattggcaagattggcatctccaacgctgaaggggaacatcgactgtgtctacttaaacaccactcgccggtcctgcagaaagaaaagctaggttctgctgcaggctggggtcgacatgatgatgctggtgtggttaaggtacaggcaagttctaatgtgtggccaggtgtaagcaaactcaggaactggcatgagtatcctcagtggagccctcagagtttgtccaatttggatgctgatgggttgcatctgttgtcggaaatgttgcaatatgagcctggaaaacacatgtcaacaaagaaggctatggaacacccttactttgatgatttgaacaaagctggtctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

225

Amino Acids

25.17

Weight (kDa)

8.72

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019473)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010754
rosa_multiflora	Rmu_sc0006453.1_g000042 Rmu_sc0006914.1_g000001
rosa_samantha	Rh4AG097600 Rh4CG106800 Rh6AG466200 Rh6BG434900 Rh6CG480900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	376, 439
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	1 cut(s)	394
AflIII	ACRYGT	2 cut(s)	196, 615
AgsI	TTSAA	5 cut(s)	52, 215, 228, 280, 661
AjnI	CCWGG	3 cut(s)	54, 490, 604
AluBI	AGCT	4 cut(s)	11, 172, 415, 668
AluI	AGCT	4 cut(s)	11, 172, 415, 668
Alw26I	GTCTC	2 cut(s)	119, 231
AlwNI	CAGNNNCTG	1 cut(s)	513
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	425
AspS9I	GGNCC	2 cut(s)	95, 397
AsuC2I	CCSGG	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	95, 397
BalI	TGGCCA	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	3 cut(s)	56, 492, 606
BciVI	GTATCC	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	119, 231
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	401, 426
BfuI	GTATCC	1 cut(s)	534
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	4 cut(s)	56, 148, 492, 606
Bme18I	GGWCC	2 cut(s)	95, 397
BmgT120I	GGNCC	2 cut(s)	95, 397
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	4 cut(s)	56, 148, 492, 606
BmsI	GCATC	4 cut(s)	351, 439, 550, 583
BpiI	GAAGAC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	518
Bse8I	GATNNNNATC	1 cut(s)	341
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	3 cut(s)	56, 492, 606
BseGI	GGATG	1 cut(s)	565
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	5 cut(s)	159, 282, 520, 542, 554
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	412
BseYI	CCCAGC	1 cut(s)	432
BshFI	GGCC	1 cut(s)	490
BsiSI	CCGG	3 cut(s)	147, 234, 395
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	119, 231
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	5 cut(s)	160, 283, 519, 541, 553
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	536
BspMAI	CTGCAG	2 cut(s)	405, 430
BspTNI	GGTCTC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	56, 492, 606
Bst4CI	ACNGT	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	38, 61, 430
BstDEI	CTNAG	5 cut(s)	168, 291, 506, 528, 540
BstF5I	GGATG	1 cut(s)	565
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	2 cut(s)	119, 231
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	339, 400, 601
BstNI	CCWGG	3 cut(s)	56, 492, 606
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	4 cut(s)	54, 146, 490, 604
BstSFI	CTRYAG	2 cut(s)	401, 426
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	138, 536
Cac8I	GCNNGC	3 cut(s)	38, 61, 430
CaiI	CAGNNNCTG	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	95, 397
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	5 cut(s)	43, 316, 443, 518, 616
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	5 cut(s)	168, 291, 506, 528, 540
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	95, 397
Eco57I	CTGAAG	1 cut(s)	375
EcoRII	CCWGG	3 cut(s)	54, 490, 604
EcoT38I	GRGCYC	1 cut(s)	539
FaeI	CATG	5 cut(s)	46, 319, 446, 521, 619
FaiI	YATR	9 cut(s)	33, 44, 299, 317, 444, 519, 600, 617, 635
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	5 cut(s)	42, 315, 442, 517, 615
FblI	GTMKAC	2 cut(s)	376, 439
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	436
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	3 cut(s)	147, 234, 395
Hin1II	CATG	5 cut(s)	46, 319, 446, 521, 619
HincII	GTYRAC	2 cut(s)	440, 621
HindII	GTYRAC	2 cut(s)	440, 621
HinfI	GANTC	3 cut(s)	70, 143, 271
HpaII	CCGG	3 cut(s)	147, 234, 395
Hpy166II	GTNNAC	3 cut(s)	377, 440, 621
Hpy188I	TCNGA	4 cut(s)	251, 543, 586, 677
Hpy188III	TCNNGA	4 cut(s)	83, 122, 234, 508
Hpy8I	GTNNAC	3 cut(s)	377, 440, 621
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	350, 622
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	403, 428, 574, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	339, 400, 601
HpyF3I	CTNAG	5 cut(s)	168, 291, 506, 528, 540
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	46, 319, 446, 521, 619
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	534
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	4 cut(s)	351, 439, 550, 583
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	198
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	539
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	3 cut(s)	23, 174, 553
MluNI	TGGCCA	1 cut(s)	490
MmeI	TCCRAC	2 cut(s)	372, 564
MnlI	CCTC	6 cut(s)	156, 230, 241, 313, 537, 549
Mox20I	TGGCCA	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	490
MseI	TTAA	2 cut(s)	381, 462
MslI	CAYNNNNRTG	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	490
MspI	CCGG	3 cut(s)	147, 234, 395
MspR9I	CCNGG	4 cut(s)	56, 148, 492, 606
MvaI	CCWGG	3 cut(s)	56, 492, 606
MwoI	GCNNNNNNNGC	3 cut(s)	339, 400, 601
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	5 cut(s)	46, 319, 446, 521, 619
NlaIV	GGNNCC	1 cut(s)	536
NspI	RCATGY	1 cut(s)	619
PciI	ACATGT	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	70, 143, 271
PflFI	GACNNNGTC	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	427
PscI	ACATGT	1 cut(s)	615
Psp6I	CCWGG	3 cut(s)	54, 490, 604
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	3 cut(s)	54, 490, 604
PspN4I	GGNNCC	1 cut(s)	536
PspPI	GGNCC	2 cut(s)	95, 397
PstI	CTGCAG	2 cut(s)	405, 430
PstNI	CAGNNNCTG	1 cut(s)	513
PsyI	GACNNNGTC	1 cut(s)	372
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	381, 462
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	2 cut(s)	95, 397
ScrFI	CCNGG	4 cut(s)	56, 148, 492, 606
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	9 cut(s)	13, 174, 201, 233, 417, 421, 468, 496, 670
SfaNI	GCATC	4 cut(s)	351, 439, 550, 583
SfcI	CTRYAG	2 cut(s)	401, 426
SinI	GGWCC	2 cut(s)	95, 397
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	23, 174, 553
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	4 cut(s)	54, 146, 490, 604
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	367, 439
TasI	AATT	3 cut(s)	23, 174, 553
TfiI	GAWTC	3 cut(s)	70, 143, 271
Tru1I	TTAA	2 cut(s)	381, 462
Tru9I	TTAA	2 cut(s)	381, 462
TscAI	CASTG	2 cut(s)	145, 536
TseI	GCWGC	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	145, 536
Tth111I	GACNNNGTC	1 cut(s)	372
VpaK11BI	GGWCC	2 cut(s)	95, 397
XceI	RCATGY	1 cut(s)	619
XmiI	GTMKAC	2 cut(s)	376, 439
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.