Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0019473

Physical Location & Seq

Genomic Coordinates Reverse (-)

65491264 .. 65497489

Gene Structure 6226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG434900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTACCAGAATGGTTGGATTGGGATTGGTAGGAAGAAGAATGGGTCCGGGTCGGCTCAATCGCAGTTCTTCTTGAGCGTCTCGACTGAACCCTACTTGAGATTCTTGTTCAAGTTCGACGGAGAGCCCGAGTGTAGCCCACAAGTTTTTCAGGTTCAGGGAAATGTGAAGCAACCGGTTTTCACTTGCAAATTTGGGTTCAGAAACGCCAGCGATATGCAAGCACGAGGAATTACACCTAGCCATCTTCTCTTCTTCACGGACTCCTCTCTCTGTGGATCATTGGCATCACCAACGCTGAAGAGGAACATCGATTGTGTCTACTTCAACCCCACTCGCCCGTCCTGCAGAAAGAAAAGGTTGTTGGGTACTCCAAATGAAACAGTGTGGCCAGGTGTAAGCAAACTCATGAACTGGCATGAGTACCCCCAATGTAGACCTCAGAGTTTGTCCAAAGCTGTTCCGAATTTGGATATTGATGGGTTGTATCTGTTGTTGGAAATGTTGCAATATGAGCTTGGAAAACACATTTCAGCAAAGAAGGCTATGGAACACCCTTACTTTGATGATTTGAACAAAGCTGGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

196

Amino Acids

22.18

Weight (kDa)

9.14

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1005	PF06219	2 - 81	2.9e-29	Protein of unknown function (DUF1005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019473)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010754
rosa_multiflora	Rmu_sc0006453.1_g000042 Rmu_sc0006914.1_g000001
rosa_samantha	Rh4AG097600 Rh4CG106800 Rh6AG466200 Rh6BG434900 Rh6CG480900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	321, 436
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	191, 466
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	5, 370, 425
AgeI	ACCGGT	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	112, 328, 574
AjnI	CCWGG	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	3 cut(s)	458, 517, 581
AluI	AGCT	3 cut(s)	458, 517, 581
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	389
ApoI	RAATTY	2 cut(s)	191, 466
AsiGI	ACCGGT	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	45
BalI	TGGCCA	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	225
BccI	CCATC	2 cut(s)	252, 473
BciT130I	CCWGG	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	49, 393
Bme18I	GGWCC	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	49, 393
BmsI	GCATC	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	94, 118
BpuMI	CCSGG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	175
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	391
BshTI	ACCGGT	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	48, 176
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	391
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	1 cut(s)	454
BspDI	ATCGAT	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	350
BspPI	GGATC	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	175
BssMI	GATC	1 cut(s)	278
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	2 cut(s)	257, 296
BstC8I	GCNNGC	2 cut(s)	211, 222
BstDEI	CTNAG	1 cut(s)	441
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	3 cut(s)	345, 514, 542
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	47, 391
BstSFI	CTRYAG	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	391
BsuTUI	ATCGAT	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	211, 222
CciI	TCATGA	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	312
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	4, 369, 424
CspAI	ACCGGT	1 cut(s)	175
CviAII	CATG	2 cut(s)	409, 419
CviJI	RGCY	9 cut(s)	56, 127, 138, 243, 391, 458, 517, 545, 581
CviKI_1	RGCY	9 cut(s)	56, 127, 138, 243, 391, 458, 517, 545, 581
CviQI	GTAC	3 cut(s)	4, 369, 424
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	257, 296
EarI	CTCTTC	2 cut(s)	257, 296
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	412, 422
FaiI	YATR	5 cut(s)	218, 410, 420, 513, 548
FatI	CATG	2 cut(s)	408, 418
FblI	GTMKAC	2 cut(s)	321, 436
FriOI	GRGCYC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	2 cut(s)	48, 176
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	412, 422
HinfI	GANTC	2 cut(s)	102, 263
HpaII	CCGG	2 cut(s)	48, 176
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	322, 437
Hpy188I	TCNGA	4 cut(s)	203, 444, 465, 590
Hpy188III	TCNNGA	3 cut(s)	73, 82, 409
Hpy8I	GTNNAC	2 cut(s)	322, 437
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	535
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	4 cut(s)	189, 220, 348, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	345, 514, 542
HpyF3I	CTNAG	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	412, 422
Kzo9I	GATC	1 cut(s)	278
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	240
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	7 cut(s)	46, 49, 61, 239, 244, 247, 313
MhlI	GDGCHC	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	3 cut(s)	191, 231, 466
MluNI	TGGCCA	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	4 cut(s)	221, 277, 297, 450
Mox20I	TGGCCA	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	391
Msp20I	TGGCCA	1 cut(s)	391
MspI	CCGG	2 cut(s)	48, 176
MspR9I	CCNGG	2 cut(s)	49, 393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	345, 514, 542
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	412, 422
NlaIV	GGNNCC	1 cut(s)	46
PagI	TCATGA	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	102
PinAI	ACCGGT	1 cut(s)	175
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	350
RsaI	GTAC	3 cut(s)	5, 370, 425
RsaNI	GTAC	3 cut(s)	4, 369, 424
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	49, 393
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	8 cut(s)	156, 241, 362, 397, 442, 460, 519, 583
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	346
SinI	GGWCC	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	73, 97
SmoI	CTYRAG	2 cut(s)	73, 97
Sse9I	AATT	3 cut(s)	191, 231, 466
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	47, 391
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	3 cut(s)	83, 117, 312
TasI	AATT	3 cut(s)	191, 231, 466
TfiI	GAWTC	1 cut(s)	102
TscAI	CASTG	1 cut(s)	390
TspDTI	ATGAA	2 cut(s)	393, 425
TspGWI	ACGGA	2 cut(s)	135, 275
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	2 cut(s)	191, 466
XmiI	GTMKAC	2 cut(s)	321, 436
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.