Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0020013

Physical Location & Seq

Genomic Coordinates Forward (+)

23385524 .. 23385871

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGCTTCCCCAACGACCTCGCCACCGAAGCCTTCGCAACCACCGGCGGCAACTCAGCTCTCAAAACCACCGATTGGATTCTCAACCGCAATTCCTCCACCACCACCTCCACTCCCACCGCCACCTCTCAACCTAAACTCGATCGCTTCTTTTTCTCCCAATCCACAAATTCACAATCCCAAGACAAACAAGAACCAGAAGAACAACAGTCCACCCCAACCTCCCAACTCCCCAAGCGCCGCAAACTTCTCGTCCCAGAAACCCGCCGCCCACTACCTCGAATAAACCAGCAACCACCGCGGCCCACTACTTGCCATTGTCGGAGAGCATGCGGCCTAGGACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

116

Amino Acids

12.79

Weight (kDa)

9.91

Isoelectric Point (pI)

86.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020013)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012872 RLG00000028944 RLG00000030222 RLG00000032978 RLG00000032982
rosa_multiflora	Rmu_sc0003994.1_g000014
rosa_samantha	Rh4DG141200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccII	CGCG	1 cut(s)	301
AciI	CCGC	9 cut(s)	48, 88, 120, 241, 265, 268, 299, 301, 333
AcsI	RAATTY	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	302, 334
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspA2I	CCTAGG	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	303, 341
AvaII	GGWCC	1 cut(s)	341
AvrII	CCTAGG	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BfaI	CTAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	5 cut(s)	49, 241, 268, 302, 334
BlnI	CCTAGG	1 cut(s)	337
BlsI	GCNGC	5 cut(s)	50, 242, 269, 303, 335
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	303, 341
BmiI	GGNNCC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	299, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	299, 337
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	304, 336
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	304, 336
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	9 cut(s)	48, 88, 120, 241, 265, 268, 299, 301, 333
BspANI	GGCC	2 cut(s)	304, 336
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	299, 337
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 298
BstNSI	RCATGY	1 cut(s)	333
BstUI	CGCG	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	304, 336
BtgI	CCRYGG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	303, 341
Cfr42I	CCGCGG	1 cut(s)	302
CviAII	CATG	1 cut(s)	330
CviJI	RGCY	5 cut(s)	6, 32, 59, 304, 336
CviKI_1	RGCY	5 cut(s)	6, 32, 59, 304, 336
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	1 cut(s)	333
FaiI	YATR	1 cut(s)	331
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	1 cut(s)	329
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	5 cut(s)	49, 241, 268, 302, 334
Fsp4HI	GCNGC	5 cut(s)	49, 241, 268, 302, 334
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	5 cut(s)	49, 241, 268, 302, 334
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	304, 336
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	333
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	324
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 298
HpyF3I	CTNAG	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	333
HspAI	GCGC	1 cut(s)	238
KspI	CCGCGG	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	4 cut(s)	58, 210, 270, 302
MaeI	CTAG	1 cut(s)	338
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	2 cut(s)	91, 169
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	6 cut(s)	29, 106, 118, 136, 232, 288
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	29, 298
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	333
NlaIV	GGNNCC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	75
PkrI	GCNGC	5 cut(s)	50, 242, 269, 303, 335
Ple19I	CGATCG	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	303, 341
PspPPI	RGGWCCY	1 cut(s)	341
PvuI	CGATCG	1 cut(s)	145
SacII	CCGCGG	1 cut(s)	302
SatI	GCNGC	5 cut(s)	49, 241, 268, 302, 334
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	2 cut(s)	303, 341
SetI	ASST	7 cut(s)	21, 61, 110, 128, 136, 224, 280
Sfr303I	CCGCGG	1 cut(s)	302
SgrAI	CRCCGGYG	1 cut(s)	44
SgrBI	CCGCGG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	341
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	2 cut(s)	91, 169
SsiI	CCGC	9 cut(s)	48, 88, 120, 241, 265, 268, 299, 301, 333
SspMI	CTAG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	141, 280
TasI	AATT	2 cut(s)	91, 169
TauI	GCSGC	5 cut(s)	51, 243, 270, 304, 336
TfiI	GAWTC	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	333
XmaJI	CCTAGG	1 cut(s)	337
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.