Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0020013

Physical Location & Seq

Genomic Coordinates Forward (+)

57895703 .. 57896137

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030222

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAAATGGAGCAGCTGCTAAGCATGGGCTTCCCCACCGATCTCGCCGCCACCGGCGGCAACTCATCTCTCAAAGCCACCGATTGGATTCTCAACAGCAATTCCTCCACCACCACCTCCACTGCCACCGCCACCTCTCAACCCAAACTCGATCGCTTCTTCCTCTCCCAATCCACAAATTCACAATCCCAAGACAAACAAGAACCAGAAGAACAACAGTCCACCCCAACCTCCCAACTCCCCAAGTGCCGCAAACTTCTCGTCCAGGAAACCCCGCCGCCCACTACCTTCTATAAACCCGCAATCGCCGCAGCCCACCACCAGCCCTTGTCGGAGCGCATGCGGCCCAGGACCCTAAACGACGTCGTCGGTCAAGACTTTCTCTTGCTCATCTCTGATCTCCTCTCTCTCTATTTCAACCTCATTACTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

145

Amino Acids

15.95

Weight (kDa)

5.27

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020013)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012872 RLG00000028944 RLG00000030222 RLG00000032978 RLG00000032982
rosa_multiflora	Rmu_sc0003994.1_g000014
rosa_samantha	Rh4DG141200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	366
AccB7I	CCANNNNNTGG	1 cut(s)	84
AciI	CCGC	9 cut(s)	48, 57, 129, 250, 275, 278, 300, 309, 343
AcsI	RAATTY	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	2 cut(s)	264, 347
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	3 cut(s)	13, 16, 311
ApoI	RAATTY	1 cut(s)	178
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	2 cut(s)	345, 351
AvaII	GGWCC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	3, 25, 323
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	2 cut(s)	266, 349
BisI	GCNGC	9 cut(s)	14, 17, 48, 58, 250, 278, 309, 312, 344
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	9 cut(s)	15, 18, 49, 59, 251, 279, 310, 313, 345
Bme1390I	CCNGG	2 cut(s)	266, 349
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	345, 351
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	2 cut(s)	266, 349
Bpu1102I	GCTNAGC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	266, 349
BseDI	CCNNGG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	3, 25, 323
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	346
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	84
BsnI	GGCC	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	40, 151, 397
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	9 cut(s)	48, 57, 129, 250, 275, 278, 300, 309, 343
BspANI	GGCC	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	3 cut(s)	40, 151, 397
BssNI	GRCGYC	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	266, 349
Bst4CI	ACNGT	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	3 cut(s)	43, 154, 400
BstMBI	GATC	3 cut(s)	40, 151, 397
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 343
BstNI	CCWGG	2 cut(s)	266, 349
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	264, 347
BstV1I	GCAGC	3 cut(s)	3, 25, 323
BsuRI	GGCC	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	345, 351
CviAII	CATG	2 cut(s)	25, 340
CviJI	RGCY	6 cut(s)	16, 30, 77, 314, 325, 346
CviKI_1	RGCY	6 cut(s)	16, 30, 77, 314, 325, 346
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	42, 153, 399
DpnII	GATC	3 cut(s)	40, 151, 397
Eco47I	GGWCC	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	264, 347
FaeI	CATG	2 cut(s)	28, 343
FaiI	YATR	3 cut(s)	26, 294, 341
FatI	CATG	2 cut(s)	24, 339
FauI	CCCGC	2 cut(s)	282, 307
Fnu4HI	GCNGC	9 cut(s)	14, 17, 48, 58, 250, 278, 309, 312, 344
Fsp4HI	GCNGC	9 cut(s)	14, 17, 48, 58, 250, 278, 309, 312, 344
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	9 cut(s)	14, 17, 48, 58, 250, 278, 309, 312, 344
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	28, 343
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	334, 397
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	3 cut(s)	365, 368, 371
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 343
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	28, 343
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	40, 151, 397
LmnI	GCTCC	2 cut(s)	10, 334
LpnPI	CCDG	7 cut(s)	67, 219, 251, 278, 334, 335, 361
Lsp1109I	GCAGC	3 cut(s)	3, 25, 323
MaeII	ACGT	1 cut(s)	363
MalI	GATC	3 cut(s)	42, 153, 399
MboI	GATC	3 cut(s)	40, 151, 397
MboII	GAAGA	2 cut(s)	151, 221
MluCI	AATT	2 cut(s)	100, 178
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	115, 127, 145, 173, 241, 413, 431
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	266, 349
MvaI	CCWGG	2 cut(s)	266, 349
MwoI	GCNNNNNNNGC	2 cut(s)	308, 343
NdeII	GATC	3 cut(s)	40, 151, 397
NlaIII	CATG	2 cut(s)	28, 343
NlaIV	GGNNCC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	9 cut(s)	15, 18, 49, 59, 251, 279, 310, 313, 345
Ple19I	CGATCG	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	264, 347
PspGI	CCWGG	2 cut(s)	264, 347
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	2 cut(s)	345, 351
PspPPI	RGGWCCY	1 cut(s)	351
PsyI	GACNNNGTC	1 cut(s)	365
PvuI	CGATCG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	16
SatI	GCNGC	9 cut(s)	14, 17, 48, 58, 250, 278, 309, 312, 344
Sau3AI	GATC	3 cut(s)	40, 151, 397
Sau96I	GGNCC	2 cut(s)	345, 351
ScrFI	CCNGG	2 cut(s)	266, 349
SetI	ASST	7 cut(s)	18, 119, 137, 233, 290, 366, 423
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	351
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	2 cut(s)	100, 178
SsiI	CCGC	9 cut(s)	48, 57, 129, 250, 275, 278, 300, 309, 343
StyD4I	CCNGG	2 cut(s)	264, 347
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	150
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	2 cut(s)	100, 178
TauI	GCSGC	6 cut(s)	50, 60, 252, 280, 311, 346
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	3 cut(s)	13, 16, 311
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	343
ZraI	GACGTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.