Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0020013

Physical Location & Seq

Genomic Coordinates Reverse (-)

30440242 .. 30440721

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGCTTCCCCAACGACCTCGCCACCGAAGCCTTCGCCACCACCGGCGGCAACTCAGCTCTCAAAACCACCGATTGGATTCTCAACCGCAATTCCTCCACCACCACCTCCACTCCCACCGCCACCTCTCAACCTAAACTCGATCGCTTCTTTTTCTCCCAATCCACAAATTCACAATCCCAAGACAAACAAGAACCAGAAGAACAACAGTCCACCCCAACCTCCCAACTCCCCAAGCGTCGCAAACTTCTCATCCCAGAAACCCTGCCGCCCACTACCTCGAATAAACCCGCAACCACCGCGGCCCACTACCAGCCCTTGTCAGAGCGCATGCGGCCTAGGACCCTAAACGATGTCGTCGGCCAAGACTTTCTCTTGCTTCTCTCTTATCTCCTATCTGTAATTCGACCTCATTACTCTTTGATTCGACCTCTTCAAGCTCAACACCAAAACCAACAACATCCACATCGCAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

160

Amino Acids

17.87

Weight (kDa)

9.69

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020013)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012872 RLG00000028944 RLG00000030222 RLG00000032978 RLG00000032982
rosa_multiflora	Rmu_sc0003994.1_g000014
rosa_samantha	Rh4DG141200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccII	CGCG	1 cut(s)	302
AciI	CCGC	8 cut(s)	48, 88, 120, 269, 291, 300, 302, 334
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	437
AluBI	AGCT	2 cut(s)	59, 440
AluI	AGCT	2 cut(s)	59, 440
AoxI	GGCC	3 cut(s)	303, 335, 361
ApoI	RAATTY	1 cut(s)	169
AspA2I	CCTAGG	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	304, 342
AvaII	GGWCC	1 cut(s)	342
AvrII	CCTAGG	1 cut(s)	338
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	4 cut(s)	49, 269, 303, 335
BlnI	CCTAGG	1 cut(s)	338
BlsI	GCNGC	4 cut(s)	50, 270, 304, 336
BmcAI	AGTACT	1 cut(s)	475
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	304, 342
BmiI	GGNNCC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	300, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	300, 338
BseGI	GGATG	2 cut(s)	252, 460
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	302
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	3 cut(s)	305, 337, 363
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	3 cut(s)	305, 337, 363
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	8 cut(s)	48, 88, 120, 269, 291, 300, 302, 334
BspANI	GGCC	3 cut(s)	305, 337, 363
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	300, 338
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	252, 460
BstFNI	CGCG	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 299, 334
BstNSI	RCATGY	1 cut(s)	334
BstUI	CGCG	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	305, 337, 363
BtgI	CCRYGG	1 cut(s)	300
BtgZI	GCGATG	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	252, 460
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	304, 342
Cfr42I	CCGCGG	1 cut(s)	303
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	8 cut(s)	6, 32, 59, 305, 316, 337, 363, 440
CviKI_1	RGCY	8 cut(s)	6, 32, 59, 305, 316, 337, 363, 440
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	1 cut(s)	334
FaiI	YATR	1 cut(s)	332
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	49, 269, 303, 335
FokI	GGATG	2 cut(s)	239, 447
Fsp4HI	GCNGC	4 cut(s)	49, 269, 303, 335
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	4 cut(s)	49, 269, 303, 335
HaeIII	GGCC	3 cut(s)	305, 337, 363
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	79, 424
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	2 cut(s)	243, 362
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 299, 334
HpyF3I	CTNAG	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	328
KspI	CCGCGG	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	58, 210, 270, 278, 326
MaeI	CTAG	1 cut(s)	339
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	212, 425
MluCI	AATT	3 cut(s)	91, 169, 402
MnlI	CCTC	8 cut(s)	29, 106, 118, 136, 232, 289, 420, 441
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	29, 299, 334
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	334
PaeI	GCATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	79, 424
PflMI	CCANNNNNTGG	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	50, 270, 304, 336
Ple19I	CGATCG	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	304, 342
PspPPI	RGGWCCY	1 cut(s)	342
PvuI	CGATCG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SacII	CCGCGG	1 cut(s)	303
SatI	GCNGC	4 cut(s)	49, 269, 303, 335
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	2 cut(s)	304, 342
ScaI	AGTACT	1 cut(s)	475
Sfr303I	CCGCGG	1 cut(s)	303
SgrAI	CRCCGGYG	1 cut(s)	44
SgrBI	CCGCGG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	342
SphI	GCATGC	1 cut(s)	334
Sse9I	AATT	3 cut(s)	91, 169, 402
SsiI	CCGC	8 cut(s)	48, 88, 120, 269, 291, 300, 302, 334
SspMI	CTAG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	141, 281, 406, 427
TasI	AATT	3 cut(s)	91, 169, 402
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	4 cut(s)	51, 271, 305, 337
TfiI	GAWTC	2 cut(s)	79, 424
Van91I	CCANNNNNTGG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	334
XmaJI	CCTAGG	1 cut(s)	338
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.