Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0020013

Physical Location & Seq

Genomic Coordinates Reverse (-)

21694786 .. 21695358

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGCTTCCCCAACGACCTCGCCATCAAAGCCTTCGCCGCCACCGGCGGCAACTCAGCTCTCAAAACCACCGATTGGATTCTCAACCGCAATTCCTCCACCACCACCTCCACTCCCACCGCCACCTCTCAACCTAAACTCAATCGCTTCTTTTTCTCCCAATCCACAAATTCACAATCCCAAGACAAACAAGAACCAGAAGAACAACAGTCCACCCCAACCTCCCAACTCCCCAAGTGCCGCAAACTTCTCGTCCCGGAAACCCCGCTGCCCAGTACCTCGAATAAACCTGCAACCTACGCGGCCCACTACCAGCCCTTGTCGGAGGGCATGCGGCCCAGGACCCTAAACGACATCGTCGCCCAAGACTTTCTCTTGCTCCTCTCTGATCTCCTATCTATCGGTGAGGAGGAGGCTTTCTTGGCAACCGGCTCAGGCACAGGCCGTGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

152

Amino Acids

16.38

Weight (kDa)

5.4

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020013)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012872 RLG00000028944 RLG00000030222 RLG00000032978 RLG00000032982
rosa_multiflora	Rmu_sc0003994.1_g000014
rosa_samantha	Rh4DG141200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccII	CGCG	1 cut(s)	302
AciI	CCGC	8 cut(s)	39, 48, 88, 120, 241, 266, 302, 334
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AoxI	GGCC	3 cut(s)	303, 335, 442
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspS9I	GGNCC	3 cut(s)	304, 336, 342
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	6 cut(s)	39, 49, 241, 269, 303, 335
BlsI	GCNGC	6 cut(s)	40, 50, 242, 270, 304, 336
Bme1390I	CCNGG	2 cut(s)	257, 340
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	3 cut(s)	304, 336, 342
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	257, 340
BmrI	ACTGGG	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	2 cut(s)	44, 428
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	69, 447
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	3 cut(s)	371, 422, 425
BseXI	GCAGC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	3 cut(s)	305, 337, 444
BsiSI	CCGG	3 cut(s)	45, 257, 429
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	3 cut(s)	305, 337, 444
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	8 cut(s)	39, 48, 88, 120, 241, 266, 302, 334
BspANI	GGCC	3 cut(s)	305, 337, 444
BspCNI	CTCAG	2 cut(s)	68, 446
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	344
BspMI	ACCTGC	1 cut(s)	298
BsrFI	RCCGGY	2 cut(s)	44, 428
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	2 cut(s)	44, 428
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	55, 433
BstFNI	CGCG	1 cut(s)	302
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 299, 422
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	255, 338
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	305, 337, 444
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	332
Cfr10I	RCCGGY	2 cut(s)	44, 428
Cfr13I	GGNCC	3 cut(s)	304, 336, 342
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	9 cut(s)	6, 32, 59, 305, 316, 337, 416, 432, 444
CviKI_1	RGCY	9 cut(s)	6, 32, 59, 305, 316, 337, 416, 432, 444
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	2 cut(s)	55, 433
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	338
FaeI	CATG	1 cut(s)	334
FaiI	YATR	1 cut(s)	332
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	6 cut(s)	39, 49, 241, 269, 303, 335
Fsp4HI	GCNGC	6 cut(s)	39, 49, 241, 269, 303, 335
GluI	GCNGC	6 cut(s)	39, 49, 241, 269, 303, 335
HaeIII	GGCC	3 cut(s)	305, 337, 444
HapII	CCGG	3 cut(s)	45, 257, 429
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	3 cut(s)	45, 257, 429
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	325, 388
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 299, 422
HpyF3I	CTNAG	2 cut(s)	55, 433
Hsp92II	CATG	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	384
Lsp1109I	GCAGC	1 cut(s)	255
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	2 cut(s)	91, 169
MmeI	TCCRAC	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	3 cut(s)	45, 257, 429
MspR9I	CCNGG	2 cut(s)	257, 340
MvaI	CCWGG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 299, 422
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	334
PaeI	GCATGC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	79
PflFI	GACNNNGTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	6 cut(s)	40, 50, 242, 270, 304, 336
PpuMI	RGGWCCY	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	3 cut(s)	304, 336, 342
PspPPI	RGGWCCY	1 cut(s)	342
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SatI	GCNGC	6 cut(s)	39, 49, 241, 269, 303, 335
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	3 cut(s)	304, 336, 342
ScrFI	CCNGG	2 cut(s)	257, 340
SetI	ASST	9 cut(s)	21, 61, 110, 128, 136, 224, 281, 292, 299
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	342
SphI	GCATGC	1 cut(s)	334
Sse9I	AATT	2 cut(s)	91, 169
SsiI	CCGC	8 cut(s)	39, 48, 88, 120, 241, 266, 302, 334
StyD4I	CCNGG	2 cut(s)	255, 338
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	281
TasI	AATT	2 cut(s)	91, 169
TauI	GCSGC	5 cut(s)	41, 51, 243, 305, 337
TfiI	GAWTC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.