Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0020013

Physical Location & Seq

Genomic Coordinates Forward (+)

27971188 .. 27971523

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAAATGCAGCAGCTGCTAAGCATGGGCTTCCCCATAGACTTCGCCACTGAAGCCCTCGCCGCCACCGGCGACAACTCCACTCTCAAAGCCACCGATTGGATTCTCAACCGCAATTCCTCCACCACCACCATCACCTCTCAACCTAATCTCGATCGCTTCTTCCTCTCCCAATCCACAAATTCACAATCCCAAGACAAACAAGAACCAGAAGAAAAACAGTCCACCCCAACCTCCCAACTCCCCAGGCGTCGCAAACATCTCATCCCGGAAACCCCGCCGCCCACTACCTCAGATAAACCCTCAACTGTCGCGGCCCACCACCAGCCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

111

Amino Acids

12.35

Weight (kDa)

5.84

Isoelectric Point (pI)

67.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	3 - 38	1.4e-07	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020013)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012872 RLG00000028944 RLG00000030222 RLG00000032978 RLG00000032982
rosa_multiflora	Rmu_sc0003994.1_g000014
rosa_samantha	Rh4DG141200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccII	CGCG	1 cut(s)	314
AciI	CCGC	5 cut(s)	63, 112, 278, 281, 314
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	16
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	3 cut(s)	10, 13, 16
ApoI	RAATTY	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	127
BbvI	GCAGC	3 cut(s)	3, 22, 25
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	269
BisI	GCNGC	6 cut(s)	11, 14, 17, 63, 281, 315
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	6 cut(s)	12, 15, 18, 64, 282, 316
Bme1390I	CCNGG	2 cut(s)	247, 269
BmgT120I	GGNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	247, 269
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	3, 22, 25
Bsh1236I	CGCG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	69, 269
BslI	CCNNNNNNNGG	1 cut(s)	99
BsnI	GGCC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	154
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	5 cut(s)	63, 112, 278, 281, 314
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	2 cut(s)	222, 310
BstACI	GRCGYC	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	20, 292
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 53, 62
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	245, 267
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	3, 22, 25
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	316
CseI	GACGC	1 cut(s)	239
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	6 cut(s)	16, 30, 56, 92, 317, 328
CviKI_1	RGCY	6 cut(s)	16, 30, 56, 92, 317, 328
DdeI	CTNAG	2 cut(s)	20, 292
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	245
FaeI	CATG	1 cut(s)	28
FaiI	YATR	2 cut(s)	26, 38
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	11, 14, 17, 63, 281, 315
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	6 cut(s)	11, 14, 17, 63, 281, 315
GluI	GCNGC	6 cut(s)	11, 14, 17, 63, 281, 315
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	2 cut(s)	69, 269
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	28
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	69, 269
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	222, 310
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 53, 62
HpyF3I	CTNAG	2 cut(s)	20, 292
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	82, 222, 232, 259, 282
Lsp1109I	GCAGC	3 cut(s)	3, 22, 25
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	154, 224
MluCI	AATT	2 cut(s)	115, 181
MnlI	CCTC	7 cut(s)	68, 130, 148, 176, 244, 301, 313
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	2 cut(s)	69, 269
MspR9I	CCNGG	2 cut(s)	247, 269
MvaI	CCWGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	16, 53, 62
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	6 cut(s)	12, 15, 18, 64, 282, 316
Ple19I	CGATCG	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	16
SatI	GCNGC	6 cut(s)	11, 14, 17, 63, 281, 315
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	247, 269
SetI	ASST	5 cut(s)	18, 140, 148, 236, 293
SgrAI	CRCCGGYG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	115, 181
SsiI	CCGC	5 cut(s)	63, 112, 278, 281, 314
StyD4I	CCNGG	2 cut(s)	245, 267
TaaI	ACNGT	2 cut(s)	222, 310
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	115, 181
TauI	GCSGC	3 cut(s)	65, 283, 317
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	3 cut(s)	10, 13, 16
TspRI	CASTG	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.