Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003994.1

Orthogroup ID

OG0020013

Physical Location & Seq

Genomic Coordinates Reverse (-)

83349 .. 83753

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003994.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgggcttccccaccgacctcgccaccgaagccctcgtcgccatcagcggtaactccgctctcaaagccaccgattggattctcaatcgcaattcctccaccaccacctccactaccactgccacctctcaacccaatctcgatcgcttcttcctctcccaatccacaaattcacaatcccaagacaaacaagaaccagaagaacaacaatccaccccaacctcccaactccccaagcgcctcaaacttctcgtcctggaaaccccgctgcccactacctcagataaacccgcaaccgtcgtggcccaccaccagcccttgtcggagcgcatgtggcccaggaccctaaacgacgtcattggccaagactttctcttgctcctctctgatctcttctttctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

134

Amino Acids

14.83

Weight (kDa)

4.99

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020013)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012872 RLG00000028944 RLG00000030222 RLG00000032978 RLG00000032982
rosa_multiflora	Rmu_sc0003994.1_g000014
rosa_samantha	Rh4DG141200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	357
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	4 cut(s)	48, 57, 266, 291
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	75
AjnI	CCWGG	2 cut(s)	255, 338
AoxI	GGCC	3 cut(s)	303, 335, 361
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	4 cut(s)	21, 53, 237, 269
AspLEI	GCGC	2 cut(s)	240, 330
AspS9I	GGNCC	3 cut(s)	304, 336, 342
AvaII	GGWCC	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	257, 340
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	257, 340
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	3 cut(s)	304, 336, 342
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	257, 340
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	257, 340
BseDI	CCNNGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	3 cut(s)	305, 337, 363
BsiEI	CGRYCG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	3 cut(s)	305, 337, 363
Bsp143I	GATC	2 cut(s)	142, 388
BspACI	CCGC	4 cut(s)	48, 57, 266, 291
BspANI	GGCC	3 cut(s)	305, 337, 363
BspCNI	CTCAG	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	2 cut(s)	142, 388
BssNI	GRCGYC	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	257, 340
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	240, 330
BstKTI	GATC	2 cut(s)	145, 391
BstMBI	GATC	2 cut(s)	142, 388
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 65, 334
BstNI	CCWGG	2 cut(s)	257, 340
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	255, 338
BstV1I	GCAGC	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	305, 337, 363
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
CfoI	GCGC	2 cut(s)	240, 330
Cfr13I	GGNCC	3 cut(s)	304, 336, 342
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	7 cut(s)	6, 32, 68, 305, 316, 337, 363
CviKI_1	RGCY	7 cut(s)	6, 32, 68, 305, 316, 337, 363
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	2 cut(s)	144, 390
DpnII	GATC	2 cut(s)	142, 388
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	255, 338
FaeI	CATG	1 cut(s)	334
FaiI	YATR	1 cut(s)	332
FatI	CATG	1 cut(s)	330
FauI	CCCGC	2 cut(s)	273, 298
Fnu4HI	GCNGC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	269
GlaI	GCGC	2 cut(s)	239, 329
GluI	GCNGC	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	305, 337, 363
HhaI	GCGC	2 cut(s)	240, 330
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	2 cut(s)	238, 328
HinP1I	GCGC	2 cut(s)	238, 328
HinfI	GANTC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	283, 325, 388
Hpy188III	TCNNGA	1 cut(s)	140
Hpy99I	CGWCG	3 cut(s)	41, 302, 356
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 65, 334
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	2 cut(s)	238, 328
Kzo9I	GATC	2 cut(s)	142, 388
LmnI	GCTCC	2 cut(s)	325, 384
LpnPI	CCDG	6 cut(s)	210, 242, 269, 325, 326, 352
Lsp1109I	GCAGC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	144, 390
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	142, 388
MboII	GAAGA	3 cut(s)	142, 212, 385
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	2 cut(s)	91, 169
MluNI	TGGCCA	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	303
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	48, 268
MspR9I	CCNGG	2 cut(s)	257, 340
MvaI	CCWGG	2 cut(s)	257, 340
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 65, 334
NdeII	GATC	2 cut(s)	142, 388
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	270
Ple19I	CGATCG	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	255, 338
PspGI	CCWGG	2 cut(s)	255, 338
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	3 cut(s)	304, 336, 342
PspPPI	RGGWCCY	1 cut(s)	342
PvuI	CGATCG	1 cut(s)	145
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	2 cut(s)	142, 388
Sau96I	GGNCC	3 cut(s)	304, 336, 342
ScrFI	CCNGG	2 cut(s)	257, 340
SetI	ASST	6 cut(s)	21, 110, 128, 224, 281, 357
SinI	GGWCC	1 cut(s)	342
Sse9I	AATT	2 cut(s)	91, 169
SsiI	CCGC	4 cut(s)	48, 57, 266, 291
StyD4I	CCNGG	2 cut(s)	255, 338
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	91, 169
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	268
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	334
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.