Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019984

Physical Location & Seq

Genomic Coordinates Forward (+)

34640512 .. 34643100

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAAAGGCAAGACCGTGAAAGGCGAAAGGAGGAAGAGAGGTTGATGCGTGAGAGGCAGCAAGAGGAAGAGAGATCAAAGGAGGAGCAAAAATTGCAATATTGCATATTCTTGTTTCTCTGTGCCCCTTTTCTTTGCCTTATCTCTCTTGGGTACATCTTGCAAGCTGAGAAAAGGAGGCAAAAGGAAGAGCTCCGAAAAGAGAGAGAGGAAGTGGGACTCAAAGCTGCACTTAAAAAGGCTACTGTAAGAAGGCTTCTTAATAAATCTATGGAACTTTATGAGGATGAGCAACTAGAGCTAATGGAGTTGGCTGCTACAAGCAAGGGATTATCCTCAATAATTAGTATTGATCCCGACACCAACCTTGATGAATGCAGAGATTCAAGGTTGTTAGGAGAGATTCATGTTGCTCTCTTGAGGTTGATTATAAAGGATACAGAAGATGTTGCAAGGACACCCTCTACTGGACTAGGTCTCAATCCAAATGGTGTTGCAAATCCTGGAGGTGGACATCCACAGATTGTTAGAGGAGCATATGCGTGGGGATTTGACATAAGGAAACTGGCAGAACTAACATGGCCTGAAATTTTTCGCCAACTAGCACTCTGCTGGATTTGGGCCACAGTTGAAGAAAAGGACTATCTCATGGTCATACTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

222

Amino Acids

25.67

Weight (kDa)

5.53

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019984)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004399 RLG00000004400 RLG00000013638 RLG00000031636
rosa_multiflora	Rmu_sc0001643.1_g000004
rosa_samantha	Rh2CG322000 Rh2DG359700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	588
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	467, 509
AgsI	TTSAA	2 cut(s)	387, 632
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	167, 193, 227, 301
AluI	AGCT	4 cut(s)	167, 193, 227, 301
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	2 cut(s)	581, 621
ApeKI	GCWGC	3 cut(s)	58, 227, 314
ApoI	RAATTY	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	70, 214, 301
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	3 cut(s)	296, 473, 602
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	3 cut(s)	59, 228, 315
BlsI	GCNGC	3 cut(s)	60, 229, 316
Bme1390I	CCNGG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	621
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 509
Bse1I	ACTGG	2 cut(s)	472, 570
BseBI	CCWGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	292, 514
BseLI	CCNNNNNNNGG	2 cut(s)	467, 509
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	472, 570
BseRI	GAGGAG	2 cut(s)	98, 546
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	70, 214, 301
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	583, 623
BsiHKAI	GWGCWC	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	467, 509
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	583, 623
Bso31I	GGTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	127, 195
Bsp143I	GATC	2 cut(s)	74, 352
BspANI	GGCC	2 cut(s)	583, 623
BspCNI	CTCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	472, 570
BssMI	GATC	2 cut(s)	74, 352
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	17, 247, 628
Bst6I	CTCTTC	3 cut(s)	30, 63, 183
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	292, 514
BstKTI	GATC	2 cut(s)	77, 355
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	74, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 94, 298
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	70, 214, 301
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	583, 623
BtsCI	GGATG	2 cut(s)	292, 514
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	407, 579, 649
CviJI	RGCY	9 cut(s)	167, 193, 227, 242, 256, 301, 314, 583, 623
CviKI_1	RGCY	9 cut(s)	167, 193, 227, 242, 256, 301, 314, 583, 623
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	76, 354
DpnII	GATC	2 cut(s)	74, 352
Eam1104I	CTCTTC	3 cut(s)	30, 63, 183
EarI	CTCTTC	3 cut(s)	30, 63, 183
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	3 cut(s)	410, 582, 652
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	406, 578, 648
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	59, 228, 315
FokI	GGATG	2 cut(s)	299, 501
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	59, 228, 315
FspBI	CTAG	3 cut(s)	296, 473, 602
GluI	GCNGC	3 cut(s)	59, 228, 315
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	583, 623
Hin1II	CATG	3 cut(s)	410, 582, 652
HinfI	GANTC	3 cut(s)	219, 383, 403
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	356, 418
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	3 cut(s)	17, 247, 628
HpyCH4V	TGCA	7 cut(s)	97, 105, 163, 230, 378, 452, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 94, 298
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	410, 582, 652
Kzo9I	GATC	2 cut(s)	74, 352
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	85, 198, 533
LpnPI	CCDG	6 cut(s)	453, 489, 516, 551, 597, 598
Lsp1109I	GCAGC	3 cut(s)	70, 214, 301
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	3 cut(s)	296, 473, 602
MalI	GATC	2 cut(s)	76, 354
MboI	GATC	2 cut(s)	74, 352
MboII	GAAGA	5 cut(s)	47, 80, 200, 455, 644
MhlI	GDGCHC	2 cut(s)	127, 195
MluCI	AATT	3 cut(s)	92, 342, 588
MlyI	GAGTC	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	2 cut(s)	234, 261
MslI	CAYNNNNRTG	1 cut(s)	541
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	55, 94, 298
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	2 cut(s)	74, 352
NlaIII	CATG	3 cut(s)	410, 582, 652
PciSI	GCTCTTC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	383, 403
PflFI	GACNNNGTC	1 cut(s)	474
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	60, 229, 316
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PsiI	TTATAA	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	621
PsyI	GACNNNGTC	1 cut(s)	474
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	541
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	234, 261
SatI	GCNGC	3 cut(s)	59, 228, 315
Sau3AI	GATC	2 cut(s)	74, 352
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	2 cut(s)	127, 195
SfaNI	GCATC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	3 cut(s)	92, 342, 588
SspI	AATATT	1 cut(s)	101
SspMI	CTAG	3 cut(s)	296, 473, 602
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	3 cut(s)	17, 247, 628
TasI	AATT	3 cut(s)	92, 342, 588
TfiI	GAWTC	2 cut(s)	383, 403
Tru1I	TTAA	2 cut(s)	234, 261
Tru9I	TTAA	2 cut(s)	234, 261
TseI	GCWGC	3 cut(s)	58, 227, 314
TspDTI	ATGAA	2 cut(s)	387, 395
Tth111I	GACNNNGTC	1 cut(s)	474
XapI	RAATTY	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	3 cut(s)	296, 473, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.