Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0019984

Physical Location & Seq

Genomic Coordinates Reverse (-)

41406898 .. 41408149

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG322000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAACTTTATGAGGATGAGCAACTAGAGCTAATGGAGTTGGTTGCTGCAAGCAAGGGATTATCCTCAATAATTAGTATTGATCCCGACACCAACCTTGATGAATGCAGAGATGTTCTTGAGTTATGGCCTTTTACTGTGGATGAGTTTGTTCAAGATTTTCATGACTATGATTCAAGGTTGTTAGGAGAGATTCATGTTGCTCTGTTGAGGTTGATTATAAAGGATATAGAAGATGTTGCAAGGACACCTTCTACTGGACTAGGTCTCAATCAAAATGGTGCTGCTAATCCTGGAGGTGGACATCCACAGATTGTTGGAGGAGAACTGGCAGAACTAACATGGCCTGAAATTTTTCACCAACTAGCACTCTCTGCTGGATTTGGGCCACAGTTGAAGAAAAGGAGTATCTCATGGTCATACTTGCCTGATAATGATGAGGTTCCCTTTCTAATTTTTAGTACTTTTACATTTCGAAGGGCATCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

163

Amino Acids

18.25

Weight (kDa)

4.36

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDT	PF02791	38 - 76	1.9e-09	DDT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019984)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004399 RLG00000004400 RLG00000013638 RLG00000031636
rosa_multiflora	Rmu_sc0001643.1_g000004
rosa_samantha	Rh2CG322000 Rh2DG359700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	351
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	257, 299
AgsI	TTSAA	3 cut(s)	155, 177, 397
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	3 cut(s)	128, 344, 386
ApeKI	GCWGC	2 cut(s)	47, 284
ApoI	RAATTY	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	34, 271
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	4 cut(s)	26, 263, 365, 490
BisI	GCNGC	2 cut(s)	48, 285
BlsI	GCNGC	2 cut(s)	49, 286
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 299
Bse1I	ACTGG	2 cut(s)	262, 333
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	22, 148, 304
BseLI	CCNNNNNNNGG	2 cut(s)	257, 299
BseNI	ACTGG	2 cut(s)	262, 333
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	34, 271
BshFI	GGCC	3 cut(s)	130, 346, 388
BslI	CCNNNNNNNGG	2 cut(s)	257, 299
BsmAI	GTCTC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	3 cut(s)	130, 346, 388
Bso31I	GGTCTC	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	82
BspANI	GGCC	3 cut(s)	130, 346, 388
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	262, 333
BssMI	GATC	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	139, 393
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	52
BstF5I	GGATG	3 cut(s)	22, 148, 304
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 374
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	34, 271
BsuRI	GGCC	3 cut(s)	130, 346, 388
BtsCI	GGATG	3 cut(s)	22, 148, 304
Cac8I	GCNNGC	1 cut(s)	52
CciI	TCATGA	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	4 cut(s)	164, 197, 342, 414
CviJI	RGCY	4 cut(s)	31, 130, 346, 388
CviKI_1	RGCY	4 cut(s)	31, 130, 346, 388
CviQI	GTAC	1 cut(s)	462
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	4 cut(s)	167, 200, 345, 417
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	4 cut(s)	163, 196, 341, 413
Fnu4HI	GCNGC	2 cut(s)	48, 285
FokI	GGATG	3 cut(s)	29, 155, 291
Fsp4HI	GCNGC	2 cut(s)	48, 285
FspBI	CTAG	4 cut(s)	26, 263, 365, 490
GluI	GCNGC	2 cut(s)	48, 285
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	130, 346, 388
Hin1II	CATG	4 cut(s)	167, 200, 345, 417
HinfI	GANTC	2 cut(s)	173, 193
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188III	TCNNGA	4 cut(s)	86, 119, 155, 164
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	261, 471
HpyCH4III	ACNGT	2 cut(s)	139, 393
HpyCH4V	TGCA	3 cut(s)	50, 108, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 374
Hsp92II	CATG	4 cut(s)	167, 200, 345, 417
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	243, 279, 306, 314, 360, 363, 441
Lsp1109I	GCAGC	2 cut(s)	34, 271
MaeI	CTAG	4 cut(s)	26, 263, 365, 490
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	245, 409
MluCI	AATT	3 cut(s)	72, 351, 453
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	7, 76, 204, 290, 314, 433
MroXI	GAANNNNTTC	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	28, 374
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	4 cut(s)	167, 200, 345, 417
NlaIV	GGNNCC	1 cut(s)	444
NspV	TTCGAA	1 cut(s)	475
PagI	TCATGA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	173, 193
PflFI	GACNNNGTC	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	49, 286
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	1 cut(s)	386
PsyI	GACNNNGTC	1 cut(s)	264
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	2 cut(s)	48, 285
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	8 cut(s)	33, 99, 182, 215, 253, 268, 301, 444
SfuI	TTCGAA	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	72, 351, 453
SspMI	CTAG	4 cut(s)	26, 263, 365, 490
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	139, 393
TaqI	TCGA	1 cut(s)	475
TasI	AATT	3 cut(s)	72, 351, 453
TatI	WGTACW	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	173, 193
TseI	GCWGC	2 cut(s)	47, 284
TspDTI	ATGAA	3 cut(s)	117, 152, 185
Tth111I	GACNNNGTC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	4 cut(s)	26, 263, 365, 490
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.