Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001643.1

Orthogroup ID

OG0019984

Physical Location & Seq

Genomic Coordinates Forward (+)

19102 .. 20140

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001643.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggaactttatgaggatgagcaactagagctaatggagttggttgctgcaagcaagggattatcctcaataattagtattgatcccggcaccaaccttgatgaatgcagagatgttcttgagttatggccttttactgtggatgagtttgttcaagcttttcatgactgtgagccgctattaagtgattcaaggttgttaggagagattcatgttgctctgttgaggttgattataaaggatatagaagatattgcaaggacaccttctactggactaggtctcaatcaaaatggtgctgctaatcctgtaggtggacatccgcagattgttggaggagtaatttccactctctgcatgcttgcaccagttcttttgcttatcttatgtatttttccccaatttttcttcgaagttacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

4.16

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019984)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004399 RLG00000004400 RLG00000013638 RLG00000031636
rosa_multiflora	Rmu_sc0001643.1_g000004
rosa_samantha	Rh2CG322000 Rh2DG359700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	176, 323
AclWI	GGATC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	272, 314
AgsI	TTSAA	2 cut(s)	155, 192
AluBI	AGCT	2 cut(s)	31, 158
AluI	AGCT	2 cut(s)	31, 158
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	47, 299
AsuC2I	CCSGG	1 cut(s)	87
AsuII	TTCGAA	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	34, 286
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	26, 278
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	3 cut(s)	48, 176, 300
BlsI	GCNGC	3 cut(s)	49, 177, 301
Bme1390I	CCNGG	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 314
Bse1I	ACTGG	2 cut(s)	277, 368
BseGI	GGATG	3 cut(s)	22, 148, 319
BseLI	CCNNNNNNNGG	2 cut(s)	272, 314
BseNI	ACTGG	2 cut(s)	277, 368
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	34, 286
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	272, 314
BsmAI	GTCTC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	176, 323
BspANI	GGCC	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	277, 368
BssMI	GATC	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	139, 170
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	52, 359, 363
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	22, 148, 319
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	34, 286
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	22, 148, 319
Cac8I	GCNNGC	3 cut(s)	52, 359, 363
CciI	TCATGA	1 cut(s)	163
CviAII	CATG	3 cut(s)	164, 212, 358
CviJI	RGCY	4 cut(s)	31, 130, 158, 175
CviKI_1	RGCY	4 cut(s)	31, 130, 158, 175
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	167, 215, 361
FaiI	YATR	8 cut(s)	12, 127, 165, 213, 236, 245, 359, 388
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	3 cut(s)	163, 211, 357
Fnu4HI	GCNGC	3 cut(s)	48, 176, 300
FokI	GGATG	3 cut(s)	29, 155, 306
Fsp4HI	GCNGC	3 cut(s)	48, 176, 300
FspBI	CTAG	2 cut(s)	26, 278
GluI	GCNGC	3 cut(s)	48, 176, 300
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	3 cut(s)	167, 215, 361
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	2 cut(s)	188, 208
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188III	TCNNGA	2 cut(s)	119, 164
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	139, 170
HpyCH4V	TGCA	5 cut(s)	50, 108, 257, 357, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	167, 215, 361
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	100, 258, 321, 381
Lsp1109I	GCAGC	2 cut(s)	34, 286
MaeI	CTAG	2 cut(s)	26, 278
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	260, 400
MluCI	AATT	3 cut(s)	72, 342, 401
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	4 cut(s)	7, 76, 219, 329
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	167, 215, 361
NlaIV	GGNNCC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	361
PagI	TCATGA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	188, 208
PflFI	GACNNNGTC	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	49, 177, 301
PsiI	TTATAA	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	3 cut(s)	48, 176, 300
Sau3AI	GATC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	8 cut(s)	33, 99, 160, 197, 230, 268, 283, 316
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	3 cut(s)	72, 342, 401
SsiI	CCGC	2 cut(s)	176, 323
SspMI	CTAG	2 cut(s)	26, 278
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	139, 170
TaqI	TCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	72, 342, 401
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	188, 208
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	2 cut(s)	47, 299
TspDTI	ATGAA	3 cut(s)	117, 152, 200
Tth111I	GACNNNGTC	1 cut(s)	279
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	2 cut(s)	26, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.