Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019984

Physical Location & Seq

Genomic Coordinates Reverse (-)

6926575 .. 6928012

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTCATGGTTTTTAAGTTTAACTGTGAGGCTGTTCTGCATAAGATTCCTTCTAGAAAGGATATAGAAGATGTTGCAAGGACACCTTCTACTGGACTAAGTCTCAATCAAAATGGTGCTGCTAATCTTGGAGGTGGACACCCACAGATTGTTGAAGGAGCATATGCGTGGGGATTTGAAATAAGGAACTGGCAGAAGCACTTAAATCTGCTAACATGGCCTGAAATTTTTCGCCAACTAGCACTCCCTGCTGGATTTGGGCCACAGTTGAAGAAAACGAGTATCTCACCACATACCACGGGAGCTGTGGCTCTGAGGGTTTATGAGATGGATTCAGCAATTACATATATACCGAATGAGAAACCTGAGCCCAATGGCGACAAGGAAGTCGAAGAACTTATTAGTTCACCACGATACTTAACAAGTGATCTTACTCCATCTGCTTTTTGTCTGCGGAAGATTCCTTTGAGATTCACCCCTATGAGAAATGATAGGGAGATTGAACCAACAGAGACAGACCACAACAAACAAAGTACTCTCCTGAAAAGTGCACGAAACAGCCTCAAACGTGGTAGAGGAGGTCATGAGCAAGGACATGGTAAAAAGTCCAAATCTGGTGGTAGTCGGCGAAAAGCTAGAGGTAATGAGAACGAGAATATGAGTCAAGGATTAGGACCTGTGGGGTGCAGAACGCAGGGACAAGGGAGTGGACAGGGCCGATGTACTGTTAGAAAGAGGAGAATGAAGAACAGGGCTGTCGAGGGGACACTTATGGGTGGGTCCTGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

264

Amino Acids

29.03

Weight (kDa)

9.8

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019984)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004399 RLG00000004400 RLG00000013638 RLG00000031636
rosa_multiflora	Rmu_sc0001643.1_g000004
rosa_samantha	Rh2CG322000 Rh2DG359700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AciI	CCGC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	225
AfaI	GTAC	2 cut(s)	535, 724
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	155, 179, 271, 503
AluBI	AGCT	2 cut(s)	305, 635
AluI	AGCT	2 cut(s)	305, 635
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	107, 506
Alw44I	GTGCAC	1 cut(s)	549
AoxI	GGCC	3 cut(s)	218, 260, 715
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	4 cut(s)	260, 674, 715, 780
AsuHPI	GGTGA	3 cut(s)	279, 399, 466
AvaII	GGWCC	2 cut(s)	674, 780
BaeGI	GKGCMC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	322, 445
BcoDI	GTCTC	2 cut(s)	107, 506
BfaI	CTAG	3 cut(s)	54, 239, 636
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	535
Bme18I	GGWCC	2 cut(s)	674, 780
BmgT120I	GGNCC	4 cut(s)	260, 674, 715, 780
BmiI	GGNNCC	1 cut(s)	781
Bpu10I	CCTNAGC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	97, 194
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	305, 357
BseNI	ACTGG	2 cut(s)	97, 194
BseRI	GAGGAG	2 cut(s)	591, 751
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	706
BshFI	GGCC	3 cut(s)	220, 262, 717
BsiHKAI	GWGCWC	1 cut(s)	553
BslFI	GGGAC	2 cut(s)	711, 778
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	2 cut(s)	107, 506
BsmFI	GGGAC	2 cut(s)	711, 778
BsnI	GGCC	3 cut(s)	220, 262, 717
Bsp1286I	GDGCHC	2 cut(s)	372, 553
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	1 cut(s)	454
BspANI	GGCC	3 cut(s)	220, 262, 717
BspCNI	CTCAG	2 cut(s)	306, 358
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	781
BsrI	ACTGG	2 cut(s)	97, 194
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	427
Bst4CI	ACNGT	3 cut(s)	26, 267, 727
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	98, 314, 366
BstDSI	CCRYGG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	107, 506
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 248
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	220, 262, 717
BtgI	CCRYGG	1 cut(s)	297
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	4 cut(s)	260, 674, 715, 780
Csp6I	GTAC	2 cut(s)	534, 723
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	4 cut(s)	7, 216, 584, 596
CviQI	GTAC	2 cut(s)	534, 723
DdeI	CTNAG	3 cut(s)	98, 314, 366
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	674, 780
EcoO109I	RGGNCCY	2 cut(s)	674, 780
EcoT38I	GRGCYC	1 cut(s)	372
FaeI	CATG	4 cut(s)	10, 219, 587, 599
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	2 cut(s)	711, 778
FatI	CATG	4 cut(s)	6, 215, 583, 595
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	3 cut(s)	54, 239, 636
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	220, 262, 717
Hin1II	CATG	4 cut(s)	10, 219, 587, 599
HinfI	GANTC	5 cut(s)	46, 332, 460, 471, 661
HphI	GGTGA	3 cut(s)	279, 399, 466
Hpy166II	GTNNAC	4 cut(s)	137, 407, 551, 710
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	54, 541, 584
Hpy8I	GTNNAC	4 cut(s)	137, 407, 551, 710
HpyAV	CCTTC	3 cut(s)	60, 96, 149
HpyCH4III	ACNGT	3 cut(s)	26, 267, 727
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	4 cut(s)	40, 77, 551, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 248
HpyF3I	CTNAG	3 cut(s)	98, 314, 366
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	4 cut(s)	10, 219, 587, 599
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	2 cut(s)	158, 302
Lsp1109I	GCAGC	1 cut(s)	106
MaeI	CTAG	3 cut(s)	54, 239, 636
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	5 cut(s)	80, 283, 404, 469, 757
MhlI	GDGCHC	2 cut(s)	372, 553
MluCI	AATT	2 cut(s)	225, 339
MlyI	GAGTC	1 cut(s)	670
MnlI	CCTC	9 cut(s)	22, 125, 309, 569, 572, 572, 632, 729, 754
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	4 cut(s)	15, 21, 203, 419
MslI	CAYNNNNRTG	2 cut(s)	166, 479
MwoI	GCNNNNNNNGC	2 cut(s)	217, 248
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	10, 219, 587, 599
NlaIV	GGNNCC	1 cut(s)	781
NmuCI	GTSAC	1 cut(s)	785
PagI	TCATGA	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	4 cut(s)	46, 332, 460, 471
PflFI	GACNNNGTC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	669
PpsI	GAGTC	1 cut(s)	669
PpuMI	RGGWCCY	2 cut(s)	674, 780
Psp5II	RGGWCCY	2 cut(s)	674, 780
PspN4I	GGNNCC	1 cut(s)	781
PspPI	GGNCC	4 cut(s)	260, 674, 715, 780
PspPPI	RGGWCCY	2 cut(s)	674, 780
PsyI	GACNNNGTC	1 cut(s)	99
RsaI	GTAC	2 cut(s)	535, 724
RsaNI	GTAC	2 cut(s)	534, 723
RseI	CAYNNNNRTG	2 cut(s)	166, 479
SaqAI	TTAA	4 cut(s)	15, 21, 203, 419
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	4 cut(s)	260, 674, 715, 780
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	1 cut(s)	670
SduI	GDGCHC	2 cut(s)	372, 553
SetI	ASST	9 cut(s)	88, 136, 307, 367, 571, 583, 637, 643, 679
SinI	GGWCC	2 cut(s)	674, 780
SmiMI	CAYNNNNRTG	2 cut(s)	166, 479
Sse9I	AATT	2 cut(s)	225, 339
SsiI	CCGC	1 cut(s)	454
SspMI	CTAG	3 cut(s)	54, 239, 636
TaaI	ACNGT	3 cut(s)	26, 267, 727
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	390, 759
TasI	AATT	2 cut(s)	225, 339
TatI	WGTACW	2 cut(s)	533, 722
TfiI	GAWTC	4 cut(s)	46, 332, 460, 471
Tru1I	TTAA	4 cut(s)	15, 21, 203, 419
Tru9I	TTAA	4 cut(s)	15, 21, 203, 419
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	1 cut(s)	758
Tth111I	GACNNNGTC	1 cut(s)	99
VneI	GTGCAC	1 cut(s)	549
VpaK11BI	GGWCC	2 cut(s)	674, 780
XapI	RAATTY	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	3 cut(s)	54, 239, 636
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.