Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019984

Physical Location & Seq

Genomic Coordinates Reverse (-)

50721427 .. 50725586

Gene Structure 4160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG359700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGGAGAGAAACGGAAAGGCAAGACCGTGAAAGGCGAAAGGAGGAAGAGAGGTTGATACGTGAGAGGCAGCGAAAGGAAGAGAGATCAAAGGAGCAAAAACGTGAAATCGAACGAAGGGAGAAGTTTTTGCAAAAAGAACATATAAGAGTTTGGAGATTTTTGATTACATTTGCAGATGTTCTTGAGTTATGGCCTTTTACTGTGGATGAGTTTGTTCAAGCTTTTCATGACCATGATATAGAAGATGTTGCAAGGACACCTTCTACTGGACTAGGTCTCAATCAAAATGGTGCTGCTAATCCTGGAGGTGGACATCCACAGATTGTTGGAGGAGCATATGCGTGGGGATTTGACATAAGGAACTGGCAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

125

Amino Acids

15.07

Weight (kDa)

6.93

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDT	PF02791	50 - 81	2.1e-09	DDT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019984)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004399 RLG00000004400 RLG00000013638 RLG00000031636
rosa_multiflora	Rmu_sc0001643.1_g000004
rosa_samantha	Rh2CG322000 Rh2DG359700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	269, 311
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	70, 296
BbvI	GCAGC	2 cut(s)	82, 283
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	2 cut(s)	71, 297
BlsI	GCNGC	2 cut(s)	72, 298
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 311
Bse1I	ACTGG	2 cut(s)	274, 371
BseBI	CCWGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	214, 316
BseLI	CCNNNNNNNGG	2 cut(s)	269, 311
BseNI	ACTGG	2 cut(s)	274, 371
BseRI	GAGGAG	2 cut(s)	19, 348
BseXI	GCAGC	2 cut(s)	82, 283
BshFI	GGCC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	269, 311
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	274, 371
BssMI	GATC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	29, 205
Bst6I	CTCTTC	2 cut(s)	42, 75
BstBAI	YACGTR	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	214, 316
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	82, 283
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	214, 316
CciI	TCATGA	1 cut(s)	229
CviAII	CATG	2 cut(s)	230, 236
CviJI	RGCY	2 cut(s)	196, 224
CviKI_1	RGCY	2 cut(s)	196, 224
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eam1104I	CTCTTC	2 cut(s)	42, 75
EarI	CTCTTC	2 cut(s)	42, 75
Eco31I	GGTCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	233, 239
FaiI	YATR	9 cut(s)	144, 146, 193, 231, 237, 242, 340, 342, 359
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FatI	CATG	2 cut(s)	229, 235
FauNDI	CATATG	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	71, 297
FokI	GGATG	2 cut(s)	221, 303
Fsp4HI	GCNGC	2 cut(s)	71, 297
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	2 cut(s)	71, 297
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	233, 239
HindIII	AAGCTT	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	2 cut(s)	185, 230
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	111, 273
HpyCH4III	ACNGT	2 cut(s)	29, 205
HpyCH4IV	ACGT	2 cut(s)	61, 103
HpyCH4V	TGCA	3 cut(s)	133, 176, 254
HpySE526I	ACGT	2 cut(s)	61, 103
Hsp92II	CATG	2 cut(s)	233, 239
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	94, 335
LpnPI	CCDG	4 cut(s)	255, 291, 318, 352
Lsp1109I	GCAGC	2 cut(s)	82, 283
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	2 cut(s)	61, 103
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	59, 92, 257
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	5 cut(s)	37, 45, 60, 302, 326
MslI	CAYNNNNRTG	2 cut(s)	234, 343
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	233, 239
PagI	TCATGA	1 cut(s)	229
PflFI	GACNNNGTC	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	72, 298
Ppu21I	YACGTR	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	276
RseI	CAYNNNNRTG	2 cut(s)	234, 343
SatI	GCNGC	2 cut(s)	71, 297
Sau3AI	GATC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	7 cut(s)	56, 64, 106, 226, 265, 280, 313
SmiMI	CAYNNNNRTG	2 cut(s)	234, 343
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	29, 205
TaiI	ACGT	2 cut(s)	64, 106
TaqI	TCGA	1 cut(s)	111
TseI	GCWGC	2 cut(s)	70, 296
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	276
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.