Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019063

Physical Location & Seq

Genomic Coordinates Forward (+)

44497771 .. 44506612

Gene Structure 8842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGGAATTTGGTGTCTGAAATTGGTCAAGGAGAATTGAAGCATTTACCAGGACAATGTGGGAGGATTCATCAGGAAAGTGAGGTGCTTTCTGGTGCTGTCGTGAGAAGTAAATATGAGTTGCATGTCGATATGTACCTCCCAAGCTTGGAGACAACACCAAGGAATTTTTCCTGCTTGACCATTGGAGATAGTATTATGGTAGCATACAACAACAAGACGTATTATATAGATATCATTGAATCAAAGCCTTCTAATGCAATAAGTATAAGTGAGACAGACTGTGAGGTGGACTTTGCACCTCCTCTTGATTGTAAGGAACCTGAAAGGCCTGTGGCACCTGTTCCTCTTAACAAGGCAACAGCTTTCTCTTGCCTCATTGCCATCGCTGGCAAACTAAAGTCAAAATTCTTTAACAAATTCAACCCTTTTACTAGAGCTGGAAGCCACTTGGATGGTAAGCCTTATGAGCCAGCATCAACTTCCTCGTCAGGGTCCAATGACAAGAAACTTGAGGTGGCCAATGGTACTGCACCACCTTCCGCAGGATCTAGAAAGCTTGTTTTTGGAGCAAATGCCAGCCGAATTCCAAAGGAGACACCAAAGGAAGCTACACAAGGCTCTAAACAAGAGCAGCAACCTGAAAAGAAAGAAGATCCCAAGTTCCAGCCATTTACAGGGAAAAAGTACTCGCTTAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

235

Amino Acids

25.48

Weight (kDa)

8.49

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N2	PF24842	50 - 102	4.3e-20	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019063)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013937
rosa_multiflora	Rmu_sc0001839.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200100
rosa_rugosa	Rorug06G0038900
rosa_samantha	Rh6AG158300 Rh6BG162300 Rh6CG156100 Rh6DG147900
rosa_wichuraiana	Rw6G013770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	2 cut(s)	556, 650
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	5 cut(s)	7, 166, 407, 419, 585
AfaI	GTAC	3 cut(s)	137, 529, 689
AfiI	CCNNNNNNNGG	4 cut(s)	148, 492, 545, 677
AgsI	TTSAA	3 cut(s)	40, 242, 424
AjnI	CCWGG	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	5 cut(s)	147, 365, 440, 559, 611
AluI	AGCT	5 cut(s)	147, 365, 440, 559, 611
Alw26I	GTCTC	3 cut(s)	146, 269, 590
AlwI	GGATC	2 cut(s)	556, 650
AoxI	GGCC	2 cut(s)	329, 519
ApeKI	GCWGC	1 cut(s)	634
ApoI	RAATTY	5 cut(s)	7, 166, 407, 419, 585
AspS9I	GGNCC	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	495
BalI	TGGCCA	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	2 cut(s)	392, 449
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	3 cut(s)	146, 269, 590
BfaI	CTAG	2 cut(s)	435, 552
BisI	GCNGC	1 cut(s)	635
BlsI	GCNGC	1 cut(s)	636
BmcAI	AGTACT	1 cut(s)	689
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	3 cut(s)	321, 339, 496
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 492, 545, 677
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	4 cut(s)	148, 492, 545, 677
BseMI	GCAATG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	331, 521
BshNI	GGYRCC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	148, 492, 545, 677
BsmAI	GTCTC	3 cut(s)	146, 269, 590
BsnI	GGCC	2 cut(s)	331, 521
Bsp143I	GATC	2 cut(s)	548, 655
BspACI	CCGC	1 cut(s)	543
BspANI	GGCC	2 cut(s)	331, 521
BspLI	GGNNCC	3 cut(s)	321, 339, 496
BspPI	GGATC	2 cut(s)	556, 650
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	548, 655
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	391, 474, 580
BstDEI	CTNAG	1 cut(s)	695
BstENI	CCTNNNNNAGG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	2 cut(s)	551, 658
BstMAI	GTCTC	3 cut(s)	146, 269, 590
BstMBI	GATC	2 cut(s)	548, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	2 cut(s)	548, 655
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	2 cut(s)	548, 655
BsuRI	GGCC	2 cut(s)	331, 521
BtgZI	GCGATG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	391, 474, 580
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	3 cut(s)	136, 528, 688
CviAII	CATG	1 cut(s)	125
CviQI	GTAC	3 cut(s)	136, 528, 688
DdeI	CTNAG	1 cut(s)	695
DpnI	GATC	2 cut(s)	550, 657
DpnII	GATC	2 cut(s)	548, 655
EaeI	YGGCCR	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	161
Eco147I	AGGCCT	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	495
EcoNI	CCTNNNNNAGG	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	128
FaiI	YATR	9 cut(s)	117, 126, 134, 200, 208, 228, 230, 269, 468
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	635
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	635
FspBI	CTAG	2 cut(s)	435, 552
GluI	GCNGC	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	331, 521
Hin1II	CATG	1 cut(s)	128
HindIII	AAGCTT	2 cut(s)	145, 557
HinfI	GANTC	2 cut(s)	67, 242
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	4 cut(s)	74, 103, 308, 552
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	261, 549
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	4 cut(s)	124, 260, 299, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	1 cut(s)	695
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	548, 655
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	2 cut(s)	435, 552
MaeII	ACGT	1 cut(s)	221
MalI	GATC	2 cut(s)	550, 657
MboI	GATC	2 cut(s)	548, 655
MboII	GAAGA	1 cut(s)	665
MflI	RGATCY	2 cut(s)	548, 655
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	7 cut(s)	7, 21, 35, 166, 407, 419, 585
MluNI	TGGCCA	1 cut(s)	521
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	2 cut(s)	351, 414
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	2 cut(s)	548, 655
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	3 cut(s)	321, 339, 496
NspI	RCATGY	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	67, 242
PkrI	GCNGC	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	321, 339, 496
PspPI	GGNCC	1 cut(s)	495
PsuI	RGATCY	2 cut(s)	548, 655
RsaI	GTAC	3 cut(s)	137, 529, 689
RsaNI	GTAC	3 cut(s)	136, 528, 688
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	351, 414
SatI	GCNGC	1 cut(s)	635
Sau3AI	GATC	2 cut(s)	548, 655
Sau96I	GGNCC	1 cut(s)	495
ScaI	AGTACT	1 cut(s)	689
ScrFI	CCNGG	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	485
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	7 cut(s)	7, 21, 35, 166, 407, 419, 585
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	2 cut(s)	435, 552
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	129
TasI	AATT	7 cut(s)	7, 21, 35, 166, 407, 419, 585
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	67, 242
Tru1I	TTAA	2 cut(s)	351, 414
Tru9I	TTAA	2 cut(s)	351, 414
TseI	GCWGC	1 cut(s)	634
TspDTI	ATGAA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	495
XagI	CCTNNNNNAGG	1 cut(s)	543
XapI	RAATTY	5 cut(s)	7, 166, 407, 419, 585
XbaI	TCTAGA	1 cut(s)	551
XceI	RCATGY	1 cut(s)	128
XspI	CTAG	2 cut(s)	435, 552
ZrmI	AGTACT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.