Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019063

Physical Location & Seq

Genomic Coordinates Forward (+)

20187126 .. 20188725

Gene Structure 1600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG156100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGGAATTTGGTGTCCGAAATTGGTCAAGGAGAATTGAAGCTTTTACTAGGACAATGTGGGAGGATTCATCAGGAAAGTGAGGCGCTTTCTGGTGCTGTCGTGATAAGTGAATATGAGTTGCATGTCGATATGTACCTCCCAAGCTTGGAGACAGCACTAAGGAATTTTTCCTGCTTGACCATTGGAGATGGTATTATGGTAGCATACAACAACAAGAAATATTATATAGATATCATTGAATCAAAGCCTTCTAATGCAATAAGTATAATTGAGAGCGACTGTGAGGTGGACTTTGCACCTCCTCTTGATTATAAGGAACCTCAGAGGCTTGTGGCACCTGTTCCTCTTAACAAGGCAACAGCTCAAGGTACAGATTTCTATCCTCATTGCCATAGCTGGTCCTGTTTGTCGTTTTCTTTCTTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

143

Amino Acids

15.87

Weight (kDa)

4.71

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N2	PF24842	50 - 102	9.2e-22	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019063)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013937
rosa_multiflora	Rmu_sc0001839.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200100
rosa_rugosa	Rorug06G0038900
rosa_samantha	Rh6AG158300 Rh6BG162300 Rh6CG156100 Rh6DG147900
rosa_wichuraiana	Rw6G013770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	7, 166
AfaI	GTAC	2 cut(s)	137, 373
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	40, 242
AluBI	AGCT	4 cut(s)	43, 147, 365, 399
AluI	AGCT	4 cut(s)	43, 147, 365, 399
Alw26I	GTCTC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	7, 166
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	337
BccI	CCATC	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	2 cut(s)	321, 339
BpuEI	CTTGAG	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	381
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	321, 339
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	161, 324, 429
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	128
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	136, 372
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	43, 147, 250, 331, 365, 399
CviKI_1	RGCY	6 cut(s)	43, 147, 250, 331, 365, 399
CviQI	GTAC	2 cut(s)	136, 372
DdeI	CTNAG	3 cut(s)	161, 324, 429
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	235
FaeI	CATG	1 cut(s)	128
FatI	CATG	1 cut(s)	124
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	89
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	2 cut(s)	41, 145
HinfI	GANTC	2 cut(s)	67, 242
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	19, 327
Hpy188III	TCNNGA	3 cut(s)	74, 103, 308
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	124, 260, 299
HpyF3I	CTNAG	3 cut(s)	161, 324, 429
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	86
LpnPI	CCDG	6 cut(s)	59, 78, 187, 354, 385, 418
MaeI	CTAG	1 cut(s)	50
MboII	GAAGA	1 cut(s)	415
MluCI	AATT	5 cut(s)	7, 21, 35, 166, 270
MseI	TTAA	1 cut(s)	351
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	321, 339
NspI	RCATGY	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	67, 242
PsiI	TTATAA	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	321, 339
PspPI	GGNCC	1 cut(s)	402
RsaI	GTAC	2 cut(s)	137, 373
RsaNI	GTAC	2 cut(s)	136, 372
SaqAI	TTAA	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	402
SinI	GGWCC	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	5 cut(s)	7, 21, 35, 166, 270
SspI	AATATT	1 cut(s)	224
SspMI	CTAG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	129
TasI	AATT	5 cut(s)	7, 21, 35, 166, 270
TfiI	GAWTC	2 cut(s)	67, 242
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TspDTI	ATGAA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	7, 166
XceI	RCATGY	1 cut(s)	128
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.