Ubiquitin fusion degradation protein 1 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000013937 |
| rosa_multiflora | Rmu_sc0001839.1_g000030 |
| rosa_roxburghii | Rroxscaffold_7G00200100 |
| rosa_rugosa | Rorug06G0038900 |
| rosa_samantha | Rh6AG158300 Rh6BG162300 Rh6CG156100 Rh6DG147900 |
| rosa_wichuraiana | Rw6G013770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 315 |
| AccB1I | GGYRCC | 1 cut(s) | 337 |
| AcsI | RAATTY | 3 cut(s) | 7, 166, 400 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 148 |
| AgsI | TTSAA | 4 cut(s) | 40, 242, 374, 425 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 154, 186 |
| AluBI | AGCT | 3 cut(s) | 43, 147, 365 |
| AluI | AGCT | 3 cut(s) | 43, 147, 365 |
| Alw26I | GTCTC | 2 cut(s) | 146, 273 |
| ApeKI | GCWGC | 1 cut(s) | 386 |
| ApoI | RAATTY | 3 cut(s) | 7, 166, 400 |
| AspLEI | GCGC | 1 cut(s) | 88 |
| AspS9I | GGNCC | 1 cut(s) | 379 |
| AvaII | GGWCC | 1 cut(s) | 379 |
| BanI | GGYRCC | 1 cut(s) | 337 |
| BbvI | GCAGC | 1 cut(s) | 373 |
| BccI | CCATC | 1 cut(s) | 185 |
| BcoDI | GTCTC | 2 cut(s) | 146, 273 |
| BfaI | CTAG | 1 cut(s) | 50 |
| BfoI | RGCGCY | 1 cut(s) | 89 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme18I | GGWCC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 1 cut(s) | 379 |
| BmiI | GGNNCC | 3 cut(s) | 321, 339, 381 |
| BpuEI | CTTGAG | 1 cut(s) | 351 |
| BsaJI | CCNNGG | 1 cut(s) | 161 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 148 |
| BseDI | CCNNGG | 1 cut(s) | 161 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 148 |
| BseRI | GAGGAG | 1 cut(s) | 294 |
| BseXI | GCAGC | 1 cut(s) | 373 |
| BshNI | GGYRCC | 1 cut(s) | 337 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 148 |
| BsmAI | GTCTC | 2 cut(s) | 146, 273 |
| BspLI | GGNNCC | 3 cut(s) | 321, 339, 381 |
| BspT107I | GGYRCC | 1 cut(s) | 337 |
| BssECI | CCNNGG | 1 cut(s) | 161 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 1 cut(s) | 284 |
| Bst6I | CTCTTC | 1 cut(s) | 369 |
| BstH2I | RGCGCY | 1 cut(s) | 89 |
| BstHHI | GCGC | 1 cut(s) | 88 |
| BstMAI | GTCTC | 2 cut(s) | 146, 273 |
| BstNSI | RCATGY | 1 cut(s) | 128 |
| BstV1I | GCAGC | 1 cut(s) | 373 |
| CfoI | GCGC | 1 cut(s) | 88 |
| Cfr13I | GGNCC | 1 cut(s) | 379 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 1 cut(s) | 125 |
| CviJI | RGCY | 5 cut(s) | 43, 147, 250, 331, 365 |
| CviKI_1 | RGCY | 5 cut(s) | 43, 147, 250, 331, 365 |
| CviQI | GTAC | 1 cut(s) | 136 |
| Eam1104I | CTCTTC | 1 cut(s) | 369 |
| EarI | CTCTTC | 1 cut(s) | 369 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco32I | GATATC | 1 cut(s) | 235 |
| Eco47I | GGWCC | 1 cut(s) | 379 |
| EcoO109I | RGGNCCY | 1 cut(s) | 379 |
| EcoRV | GATATC | 1 cut(s) | 235 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| FaeI | CATG | 1 cut(s) | 128 |
| FatI | CATG | 1 cut(s) | 124 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| FspBI | CTAG | 1 cut(s) | 50 |
| GlaI | GCGC | 1 cut(s) | 87 |
| GluI | GCNGC | 1 cut(s) | 387 |
| HaeII | RGCGCY | 1 cut(s) | 89 |
| HhaI | GCGC | 1 cut(s) | 88 |
| Hin1II | CATG | 1 cut(s) | 128 |
| Hin6I | GCGC | 1 cut(s) | 86 |
| HinP1I | GCGC | 1 cut(s) | 86 |
| HindIII | AAGCTT | 2 cut(s) | 41, 145 |
| HinfI | GANTC | 3 cut(s) | 67, 242, 421 |
| Hpy166II | GTNNAC | 1 cut(s) | 292 |
| Hpy188I | TCNGA | 1 cut(s) | 19 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 103, 308 |
| Hpy8I | GTNNAC | 1 cut(s) | 292 |
| HpyAV | CCTTC | 1 cut(s) | 261 |
| HpyCH4III | ACNGT | 1 cut(s) | 284 |
| HpyCH4V | TGCA | 3 cut(s) | 124, 260, 299 |
| Hsp92II | CATG | 1 cut(s) | 128 |
| HspAI | GCGC | 1 cut(s) | 86 |
| LpnPI | CCDG | 6 cut(s) | 59, 78, 187, 336, 354, 396 |
| Lsp1109I | GCAGC | 1 cut(s) | 373 |
| MaeI | CTAG | 1 cut(s) | 50 |
| MboII | GAAGA | 1 cut(s) | 386 |
| MluCI | AATT | 6 cut(s) | 7, 21, 35, 166, 270, 400 |
| MnlI | CCTC | 8 cut(s) | 57, 76, 149, 280, 312, 315, 357, 370 |
| MseI | TTAA | 1 cut(s) | 351 |
| NlaIII | CATG | 1 cut(s) | 128 |
| NlaIV | GGNNCC | 3 cut(s) | 321, 339, 381 |
| NspI | RCATGY | 1 cut(s) | 128 |
| PfeI | GAWTC | 3 cut(s) | 67, 242, 421 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| PpuMI | RGGWCCY | 1 cut(s) | 379 |
| PsiI | TTATAA | 1 cut(s) | 315 |
| Psp5II | RGGWCCY | 1 cut(s) | 379 |
| PspN4I | GGNNCC | 3 cut(s) | 321, 339, 381 |
| PspPI | GGNCC | 1 cut(s) | 379 |
| PspPPI | RGGWCCY | 1 cut(s) | 379 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| SaqAI | TTAA | 1 cut(s) | 351 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau96I | GGNCC | 1 cut(s) | 379 |
| SetI | ASST | 8 cut(s) | 45, 141, 149, 291, 304, 325, 343, 367 |
| SinI | GGWCC | 1 cut(s) | 379 |
| SmlI | CTYRAG | 1 cut(s) | 366 |
| SmoI | CTYRAG | 1 cut(s) | 366 |
| Sse9I | AATT | 6 cut(s) | 7, 21, 35, 166, 270, 400 |
| SspMI | CTAG | 1 cut(s) | 50 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaaI | ACNGT | 1 cut(s) | 284 |
| TaqI | TCGA | 1 cut(s) | 129 |
| TasI | AATT | 6 cut(s) | 7, 21, 35, 166, 270, 400 |
| TfiI | GAWTC | 3 cut(s) | 67, 242, 421 |
| Tru1I | TTAA | 1 cut(s) | 351 |
| Tru9I | TTAA | 1 cut(s) | 351 |
| TseI | GCWGC | 1 cut(s) | 386 |
| TspDTI | ATGAA | 1 cut(s) | 59 |
| VpaK11BI | GGWCC | 1 cut(s) | 379 |
| XapI | RAATTY | 3 cut(s) | 7, 166, 400 |
| XceI | RCATGY | 1 cut(s) | 128 |
| XspI | CTAG | 1 cut(s) | 50 |