Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019063

Physical Location & Seq

Genomic Coordinates Forward (+)

47402795 .. 47403625

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAGAGTTTATATAGGAATACAAAGCTAGTCTTGGAGACAACACTAAGGAATTTTTCCTGCTTGACCATTGGAGATGGTATTATGGTAGCATACAACAACAGGAAGTATTATATAAATATCATTGAATCAAAGCCTTCTAATGCAATAAGTATAATTGAGAGAGACTGTGAGGTGGACTTTGCACCTCCTCTTGATTATAAGGAACCTGAAAGGCTTGTGGCACCTGTTCCTCATAACAAGGCAACAGCTCAAGGTACAGATTTCTATCCTCATTGCCATCGCTGGTCCTGTTTGTCGTTTTCTTTCTTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

105

Amino Acids

12.12

Weight (kDa)

6.26

Isoelectric Point (pI)

63.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N2	PF24842	7 - 64	2.3e-23	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019063)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013937
rosa_multiflora	Rmu_sc0001839.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200100
rosa_rugosa	Rorug06G0038900
rosa_samantha	Rh6AG158300 Rh6BG162300 Rh6CG156100 Rh6DG147900
rosa_wichuraiana	Rw6G013770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	2 cut(s)	28, 251
AluI	AGCT	2 cut(s)	28, 251
Alw26I	GTCTC	2 cut(s)	32, 159
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	223
BccI	CCATC	2 cut(s)	71, 288
BcoDI	GTCTC	2 cut(s)	32, 159
BfaI	CTAG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	207, 225
BpuEI	CTTGAG	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	267
BseJI	GATNNNNATC	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	32, 159
BspLI	GGNNCC	2 cut(s)	207, 225
BspT107I	GGYRCC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	47, 315
BstMAI	GTCTC	2 cut(s)	32, 159
BtgZI	GCGATG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	258
CviJI	RGCY	4 cut(s)	28, 136, 217, 251
CviKI_1	RGCY	4 cut(s)	28, 136, 217, 251
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	47, 315
Eco47I	GGWCC	1 cut(s)	288
FaiI	YATR	9 cut(s)	13, 15, 86, 94, 114, 116, 155, 201, 237
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FspBI	CTAG	1 cut(s)	29
HinfI	GANTC	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	146, 185
HpyF3I	CTNAG	2 cut(s)	47, 315
LpnPI	CCDG	6 cut(s)	73, 88, 222, 240, 271, 304
MaeI	CTAG	1 cut(s)	29
MboII	GAAGA	1 cut(s)	301
MluCI	AATT	2 cut(s)	52, 156
MnlI	CCTC	5 cut(s)	166, 198, 201, 243, 282
NlaIV	GGNNCC	2 cut(s)	207, 225
PfeI	GAWTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	207, 225
PspPI	GGNCC	1 cut(s)	288
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	288
SetI	ASST	7 cut(s)	30, 177, 190, 211, 229, 253, 259
SinI	GGWCC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	2 cut(s)	52, 156
SspMI	CTAG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	170
TasI	AATT	2 cut(s)	52, 156
TfiI	GAWTC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.