Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0019063

Physical Location & Seq

Genomic Coordinates Reverse (-)

25431381 .. 25433467

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTGAAAGTTCAGAGAATATTTTTTTGTGAGACCCAAGTGAGCTGCTTGGAGACAGCACTAAGGAATTTTTCCTGCTTGACCATTGGAGATGGTATTATGATAGCATACAACAACAAGAAGTATTATATAGATATCATTGAATCAAAGCCTTCTAATGCAATAAGTATAATTGAGAGAGACTGTGAGGTGGACTTTGCACCTCCTCTTGATTATAAGGAACCTGAAAGGCTTGTGGCACCTGTTCCTCTTAACAAGGCAACAGCTCAAGTTGAAGAGGACCCTGCTGCGACTGAACCAAATTCTGTTTTAGAATATGAGATTCAAAGAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

112

Amino Acids

12.77

Weight (kDa)

4.64

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N2	PF24842	15 - 69	1.5e-22	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019063)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013937
rosa_multiflora	Rmu_sc0001839.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200100
rosa_rugosa	Rorug06G0038900
rosa_samantha	Rh6AG158300 Rh6BG162300 Rh6CG156100 Rh6DG147900
rosa_wichuraiana	Rw6G013770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	67, 301
AgsI	TTSAA	3 cut(s)	143, 275, 326
AluBI	AGCT	2 cut(s)	45, 266
AluI	AGCT	2 cut(s)	45, 266
Alw26I	GTCTC	3 cut(s)	26, 47, 174
ApeKI	GCWGC	2 cut(s)	45, 287
ApoI	RAATTY	2 cut(s)	67, 301
AspS9I	GGNCC	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	32, 274
BccI	CCATC	1 cut(s)	86
BcoDI	GTCTC	3 cut(s)	26, 47, 174
BisI	GCNGC	2 cut(s)	46, 288
BlsI	GCNGC	2 cut(s)	47, 289
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	3 cut(s)	222, 240, 282
BpuEI	CTTGAG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	32, 274
BshNI	GGYRCC	1 cut(s)	238
BsmAI	GTCTC	3 cut(s)	26, 47, 174
Bso31I	GGTCTC	1 cut(s)	26
BspLI	GGNNCC	3 cut(s)	222, 240, 282
BspT107I	GGYRCC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	62
BstMAI	GTCTC	3 cut(s)	26, 47, 174
BstV1I	GCAGC	2 cut(s)	32, 274
Cfr13I	GGNCC	1 cut(s)	280
CviJI	RGCY	4 cut(s)	45, 151, 232, 266
CviKI_1	RGCY	4 cut(s)	45, 151, 232, 266
DdeI	CTNAG	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRV	GATATC	1 cut(s)	136
FaiI	YATR	7 cut(s)	101, 109, 129, 131, 170, 216, 318
Fnu4HI	GCNGC	2 cut(s)	46, 288
Fsp4HI	GCNGC	2 cut(s)	46, 288
GluI	GCNGC	2 cut(s)	46, 288
HinfI	GANTC	2 cut(s)	143, 322
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	161, 200
HpyF3I	CTNAG	1 cut(s)	62
LpnPI	CCDG	4 cut(s)	88, 237, 255, 297
Lsp1109I	GCAGC	2 cut(s)	32, 274
MboII	GAAGA	1 cut(s)	287
MluCI	AATT	3 cut(s)	67, 171, 301
MnlI	CCTC	5 cut(s)	181, 213, 216, 258, 271
MseI	TTAA	1 cut(s)	252
NlaIV	GGNNCC	3 cut(s)	222, 240, 282
PfeI	GAWTC	2 cut(s)	143, 322
PkrI	GCNGC	2 cut(s)	47, 289
PpuMI	RGGWCCY	1 cut(s)	280
PsiI	TTATAA	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	222, 240, 282
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	46, 288
Sau96I	GGNCC	1 cut(s)	280
SetI	ASST	6 cut(s)	47, 192, 205, 226, 244, 268
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
Sse9I	AATT	3 cut(s)	67, 171, 301
SspI	AATATT	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	185
TasI	AATT	3 cut(s)	67, 171, 301
TfiI	GAWTC	2 cut(s)	143, 322
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	2 cut(s)	45, 287
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	2 cut(s)	67, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.